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  1. Know2BIO Know2BIO Public

    Forked from Yijia-Xiao/Know2BIO

    Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs

    Python

  2. BE298FinalProject BE298FinalProject Public

    Fall 2022 Bioengineering 298 Final Project: using protein networks to understand drug and disease mechanisms

    Jupyter Notebook

  3. caseolap_lift caseolap_lift Public

    Forked from CaseOLAP/caseolap_lift

    Fall 2022 Project collaborating with Alexander Pelletier et al. to improve CaseOLAP's input data quantity, result quality, and usability.

    Python

  4. gene_to_anatomy_text_mining gene_to_anatomy_text_mining Public

    Uses PubTator3 to identify genes in PubMed articles. Uses PubMed API and MeSH annotations to identify articles studying anatomies. Uses co-occurrence of gene mentions and anatomy topics to calculat…

    Python

  5. knowledge_graph_of_text_mined_pubmed knowledge_graph_of_text_mined_pubmed Public

    knowledge_graph_of_text_mined_pubmed

    Python

  6. classifying_pubmed_documents classifying_pubmed_documents Public

    Python