E-DADS Resources

Various tools and resources for the E-DADS project

1. FreeSurfer 7.1.1 BIDS App
2. MRI-QC 0.16.1 BIDS App

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FreeSurfer 7.1.1 BIDS-App container

• Source code (fork of BIDS-App/freesurfer): github.com/e-dads/freesurfer
• Get the pre-built container from Neil's dockerhub: docker pull noxtoby/edads:freesurfer7p1p1
• Contact: Neil at UCL

Running this container on a cluster? Of course you are!
This is how to use docker and docker2singularity to convert the container to a singularity image:

docker run \
-v /var/run/docker.sock:/var/run/docker.sock \
-v /path/to/output/folder:/output \
--privileged -t --rm \
singularityware/docker2singularity \
noxtoby/edads:freesurfer7p1p1

MRIQC 0.16.1 BIDS-App container

• To use this version, the easiest way to build a singularity container is via Poldrack Lab's dockerhub:

docker pull poldracklab/mriqc:0.16.1

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