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Revert changes that aren't needed.
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Revert basics container.
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mberacochea committed Nov 25, 2022
1 parent b674fae commit b420578
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion docker/basics/Dockerfile
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Expand Up @@ -10,7 +10,7 @@ LABEL about.home="https://github.com/EBI-Metagenomics/emg-viral-pipeline/"
LABEL maintainer="MGnify team <https://www.ebi.ac.uk/support/metagenomics>"

RUN apt update && \
apt install -y --no-install-recommends procps wget curl tar gzip python3 pdftk-java seqtk && \
apt install -y --no-install-recommends procps wget curl tar gzip python3 pdftk-java && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

2 changes: 1 addition & 1 deletion nextflow/configs/container.config
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ process {
withLabel: chromomap { container = 'microbiomeinformatics/r_chromomap:v0.2' }
withLabel: multiqc { container = 'microbiomeinformatics/multiqc:v1.9' }
withLabel: fastqc { container = 'microbiomeinformatics/fastqc:v0.11.9' }
withLabel: basics { container = 'quay.io/microbiome-informatics/emg-viral-pipeline-basics:1.1' }
withLabel: basics { container = 'microbiomeinformatics/emg-viral-pipeline-basics:1.0' }

withLabel: plot_contig_map {container = 'microbiomeinformatics/emg-viral-pipeline-plot-contig-map:v1' }
withLabel: virfinder { container = 'microbiomeinformatics/virfinder:v1.1__eb8032e' }
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