1.0 release PR :) #88
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Reverting that change.
Revert basics container.
Also added a build.py script to build all the containers. This is a WIP
The new base image has the required tools for Nextflow monitoring. Moved to biocontainers: - fastp - phanotate - spades -> and upgraded to the latest version (3.15.5) - multiqc - fastqc - virsorter
This branch has a the following: - Moved over to quay.io (dockerhub has pull limits now) - Migrated some tools to biocontainers, less maintaince work - Added the tools required for Nextflow monitoring and trace TODO: complete the build.py command to push all the containers. I would like to use gh actions to push the containers when we get a new release.
…-trace-deps-on-containers Update containers, nf trace compatible now. Some to biocontainers.
The test is incomplete, only checks the results/08-final folder files using the an md5sum. Setup for the unit test on EBI - Jenkins.
Add one simple pytest-workflow test
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