Adjusted BFO imports to correct the upper hierarchy

EBISPOT · Jun 20, 2024 · 4c4a3e6 · 4c4a3e6
1 parent ca9e768
commit 4c4a3e6
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Showing 5 changed files with 19 additions and 7 deletions.
diff --git a/src/ontology/components/afpo_annotations.owl b/src/ontology/components/afpo_annotations.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/hancestro/components/afpo_annotations.owl>
-<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-19/components/afpo_annotations.owl>
-Annotation(owl:versionInfo "2024-06-19")
+<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-20/components/afpo_annotations.owl>
+Annotation(owl:versionInfo "2024-06-20")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/AfPO_0000056>))
 Declaration(Class(<http://purl.obolibrary.org/obo/AfPO_0000057>))

diff --git a/src/ontology/components/dbpedia_geography.owl b/src/ontology/components/dbpedia_geography.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/hancestro/components/dbpedia_geography.owl>
-<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-19/components/dbpedia_geography.owl>
-Annotation(owl:versionInfo "2024-06-19")
+<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-20/components/dbpedia_geography.owl>
+Annotation(owl:versionInfo "2024-06-20")
 
 Declaration(Class(<http://dbpedia.org/resource/Africa>))
 Declaration(Class(<http://dbpedia.org/resource/Asia>))

diff --git a/src/ontology/components/gaz_xrefs.owl b/src/ontology/components/gaz_xrefs.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/hancestro/components/gaz_xrefs.owl>
-<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-19/components/gaz_xrefs.owl>
-Annotation(owl:versionInfo "2024-06-19")
+<http://purl.obolibrary.org/obo/hancestro/releases/2024-06-20/components/gaz_xrefs.owl>
+Annotation(owl:versionInfo "2024-06-20")
 
 Declaration(Class(<http://dbpedia.org/resource/Afghanistan>))
 Declaration(Class(<http://dbpedia.org/resource/Africa>))

diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl
@@ -17,6 +17,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000004>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000019>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000020>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
+Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000141>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/BFO_0000179>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/BFO_0000180>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000112>))
@@ -164,6 +165,16 @@ AnnotationAssertion(Annotation(<http://purl.obolibrary.org/obo/IAO_0010000> <htt
 AnnotationAssertion(rdfs:isDefinedBy <http://purl.obolibrary.org/obo/BFO_0000040> <http://purl.obolibrary.org/obo/bfo.owl>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000040> "material entity"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/BFO_0000040> <http://purl.obolibrary.org/obo/BFO_0000004>)
+DisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000040> <http://purl.obolibrary.org/obo/BFO_0000141>)
+
+# Class: <http://purl.obolibrary.org/obo/BFO_0000141> (immaterial entity)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000179> <http://purl.obolibrary.org/obo/BFO_0000141> "immaterial")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000180> <http://purl.obolibrary.org/obo/BFO_0000141> "ImmaterialEntity")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000141> "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10"@en)
+AnnotationAssertion(rdfs:isDefinedBy <http://purl.obolibrary.org/obo/BFO_0000141> <http://purl.obolibrary.org/obo/bfo.owl>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000141> "immaterial entity"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/BFO_0000141> <http://purl.obolibrary.org/obo/BFO_0000004>)
 
 
 )
diff --git a/src/ontology/imports/bfo_terms.txt b/src/ontology/imports/bfo_terms.txt
@@ -1,2 +1,3 @@
 BFO:0000019
-BFO:0000040
+BFO:0000040
+BFO:0000141