move update of executionContext to fix resume

EBIvariation · Feb 10, 2022 · 406e361 · 406e361
1 parent 5d77ffb
commit 406e361
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/...peline/src/main/java/uk/ac/ebi/eva/accession/pipeline/batch/io/AccessionReportWriter.java b/...peline/src/main/java/uk/ac/ebi/eva/accession/pipeline/batch/io/AccessionReportWriter.java
@@ -146,7 +146,6 @@ public void open(ExecutionContext executionContext) throws ItemStreamException {
                     boolean append = false;
                     this.contigsWriter = new BufferedWriter(new FileWriter(this.contigsOutput, append));
                     this.variantsWriter = new BufferedWriter(new FileWriter(this.variantsOutput, append));
-                    executionContext.put(IS_HEADER_WRITTEN_KEY, IS_HEADER_WRITTEN_VALUE);
                 }
             }
         } catch (IOException e) {
@@ -176,7 +175,7 @@ private void loadContigMappingFromTemporaryFile(File contigMappingFile) throws I
     }
 
     public void update(ExecutionContext executionContext) throws ItemStreamException {
-
+        executionContext.put(IS_HEADER_WRITTEN_KEY, IS_HEADER_WRITTEN_VALUE);
     }
 
     public void close() throws ItemStreamException {