Apply annotation to all split RS

eva-accession-release-automation/gather_clustering_counts/bash/count_rs_for_all_files.sh

@@ -20,7 +20,7 @@ do
     if [[ ${INPUT} == *.vcf.gz ]]
     then
         # There are sometime multiple rs (separated by ;) in one line that needs to be split across multiple lines
-        zcat  "${INPUT}" | grep -v '^#' | awk -v annotation="${ASSEMBLY}-${SC_NAME}-${TYPE}" '{gsub(";","\n",$3); print $3" "annotation}' > ${OUTPUT}
+        zcat  "${INPUT}" | grep -v '^#' | awk '{gsub(";","\n",$3); print $3}' | awk -v annotation="${ASSEMBLY}-${SC_NAME}-${TYPE}" '{print $0" "annotation}' > ${OUTPUT}
     elif [[ ${INPUT} == *_unmapped_ids.txt.gz ]]
     then
         SC_NAME=$(basename $(dirname ${INPUT}));