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tcezard committed Jun 27, 2024
1 parent b2df437 commit aea54fa
Showing 1 changed file with 5 additions and 3 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -130,9 +130,11 @@ def create_symlink_to_species_folder_from_assembly_folder(current_release_assemb
assembly_accession)
run_command_with_output(f"""Creating symlink from assembly folder {public_release_assembly_species_folder} to
species folder {public_release_species_assembly_folder}""",
'bash -c "cd {0} && ln -sfT {1} {2}"'.format(public_release_assembly_folder,
os.path.relpath(public_release_species_assembly_folder,
public_release_assembly_folder), public_release_assembly_species_folder))
'bash -c "cd {0} && ln -sfT {1} {2}"'.format(
public_release_assembly_folder,
os.path.relpath(public_release_species_assembly_folder,
public_release_assembly_folder),
public_release_assembly_species_folder))


def recreate_public_release_species_assembly_folder(assembly_accession, public_release_species_assembly_folder):
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