update DgvaStudyBrowser to convert pubmed IDs to CURIEs

EBIvariation · Jan 4, 2024 · e53f55e · e53f55e
1 parent 17dce5f
commit e53f55e
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/eva-lib/src/main/java/uk/ac/ebi/eva/lib/entities/DgvaStudyBrowser.java b/eva-lib/src/main/java/uk/ac/ebi/eva/lib/entities/DgvaStudyBrowser.java
@@ -119,10 +119,14 @@ public VariantStudy generateVariantStudy() {
         String[] publications = null;
         try {
             uri = new URI(studyUrl);
-            publications = (pubmedId == null) ? null : pubmedId.split(", ");
         } catch (URISyntaxException | NullPointerException ex) {
             // Ignore, default value null.
         }
+        publications = (pubmedId == null) ? null : pubmedId.split(", ");
+        // Convert to CURIE to be consistent with EvaStudyBrowser
+        for (int i = 0; i < publications.length; i++) {
+            publications[i] = "PubMed:" + publications[i];
+        }
 
         VariantStudy study = new VariantStudy(displayName, studyAccession, null,
                                               studyDescription, taxIds, commonName, scientificName,