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This repository has been archived by the owner on Sep 15, 2020. It is now read-only.

Tests for the repeat expansion pipeline

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@tskir tskir released this 21 Apr 17:24
· 8 commits to master since this release
v1.1.0
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  • Implemented the tests
    • Added a test dataset which includes all NT expansion variants from ClinVar. Records of special interest are moved to the top and annotated. See more details in repeat_expansion_variants/tests/README.md
    • Implemented the integration test using pytest
  • Small adjustments to the pipeline
    • Fixed a regexp
    • Modified column order
  • Technical changes
    • Updated configuration files: .gitignore, .idea
    • Simplified installation instructions for Travis
    • Added setup.py and __init__.py to make the repository a proper package (required for running the tests)
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