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create meta.xml files for event core and occurrence core #87

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mobb opened this issue Sep 24, 2020 · 6 comments
Open
2 of 4 tasks

create meta.xml files for event core and occurrence core #87

mobb opened this issue Sep 24, 2020 · 6 comments
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@mobb
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mobb commented Sep 24, 2020

To generate GBIF submissions from ecocomDP, we will include a meta.xml file describing the tables and columns. We plan to create two types: occurrence core, and event core.

First pass will be column names.

Still to resolve/confirm:

  • line endings (depend on the system generating the file)
  • rowType names the core-type
  • location (filename - are these all the same? or vary with pkg?)
  • indexing: is it true that files are zero-based, but fields are 1-based?
@mobb mobb self-assigned this Sep 24, 2020
@mobb mobb added this to To do in GBIF Contributions via automation Sep 24, 2020
mobb added a commit that referenced this issue Sep 24, 2020
@mobb
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mobb commented Oct 9, 2020

meta files are in the directory: inst/[dwca-type]
we will need to set the line ending attribute (sample is \r\n)

@clnsmth
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clnsmth commented Oct 13, 2020

Line endings are explicitly defined as \r\n

@clnsmth
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clnsmth commented Aug 3, 2021

@mobb location file name doesn't vary with pkg (I've checked this off the list). What do we need to do about rowType and indexing? Are these items resolved?

@tucotuco
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tucotuco commented Aug 8, 2021

Hello. I am the convener of the Darwin Core Maintenance Group and have recently read https://doi.org/10.1016/j.ecoinf.2021.101374 and I am concerned about some misconceptions put forth there. I wonder if there is anything I can help with in terms of the best use of Darwin Core and aggregation via GBIF.

@mobb
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mobb commented Aug 9, 2021

Absolutely, @tucotuco - it would be great to have additional input, especially if we are misinterpreting DC. We are still working on this last bit of code. Here is an example of what it currently creates: https://portal.edirepository.org/nis/mapbrowse?packageid=edi.927.1
I am out of the office till later in August - perhaps we can talk then?

@tucotuco
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tucotuco commented Aug 9, 2021 via email

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