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fix checks for read/write access using eessi_container.sh script #227

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fix checks for read/write access using eessi_container.sh script #227

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d9c0f68
re-enable checks for eessi_container.sh --access rw
boegel Feb 10, 2023
b48398d
only run readwrite test, run another script in container
truib Feb 17, 2023
edc351c
get more info about container env; fuse
truib Feb 17, 2023
9c5ea73
get more info about fuse-overlayf, kernel, singularity
truib Feb 17, 2023
bb224aa
run same readwrite test with different container
truib Feb 17, 2023
14f3c3f
comment deb10 test; add test with build_container.sh
truib Feb 17, 2023
a63a927
only collect information
truib Feb 17, 2023
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83 changes: 75 additions & 8 deletions .github/workflows/test_eessi_container_script.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,13 +11,14 @@ jobs:
matrix:
SCRIPT_TEST:
- help
- run
- shell
- container
- resume
# FIXME disabled because '--access rw' is not working in CI environment
#- readwrite
#- save
# - run
# - shell
# - container
# - resume
# - readwrite
# - build_container
# - rwdeb10
# - save
steps:
- name: Check out software-layer repository
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
Expand All @@ -30,6 +31,7 @@ jobs:
run: |
mount
df -h
cat /etc/apptainer/apptainer.conf

- name: Test eessi_container.sh script
run: |
Expand Down Expand Up @@ -63,19 +65,84 @@ jobs:
grep "Debian GNU/Linux 10" ${outfile}

# test use of '--access rw' to get write access in container
elif [[ ${{matrix.SCRIPT_TEST}} == 'readwrite' ]]; then
elif [[ ${{matrix.SCRIPT_TEST}} == readwrite ]]; then
outfile0=out_readwrite0.txt
outfile=out_readwrite.txt
fn="test_${RANDOM}.txt"
echo "ls -lisa /cvmfs /cvmfs/pilot.eessi-hpc.org" > explore_script.sh
echo "id" >> explore_script.sh
echo "mount" >> explore_script.sh
echo "df -h" >> explore_script.sh
echo "cat /etc/fuse.conf" >> explore_script.sh
echo "dpkg -S /etc/fuse.conf" >> explore_script.sh
echo "dpkg -L fuse3" >> explore_script.sh
echo "fuse-overlayfs -V" >> explore_script.sh
echo "uname -a" >> explore_script.sh
chmod +x explore_script.sh
echo "touch /cvmfs/pilot.eessi-hpc.org/${fn}" > test_script.sh
chmod u+x test_script.sh
export SINGULARITY_BIND="$PWD:/test"
singularity version
./eessi_container.sh --verbose --access rw --mode run /test/explore_script.sh 2>&1 | tee -a ${outfile0}
./eessi_container.sh --verbose --access rw --mode run /test/test_script.sh > ${outfile}

tmpdir=$(grep "\-\-resume" ${outfile} | sed "s/.*--resume \([^']*\).*/\1/g")
# note: must use '--access rw' again here, since touched file is in overlay upper dir
./eessi_container.sh --verbose --resume ${tmpdir} --access rw --mode shell <<< "ls -l /cvmfs/pilot.eessi-hpc.org/${fn}" > ${outfile}
grep "/cvmfs/pilot.eessi-hpc.org/${fn}$" $outfile

# test use of build_container.sh script
elif [[ ${{matrix.SCRIPT_TEST}} == build_container ]]; then
outfile0=out_readwrite0.txt
outfile=out_readwrite.txt
fn="test_${RANDOM}.txt"
echo "ls -lisa /cvmfs /cvmfs/pilot.eessi-hpc.org" > explore_script.sh
echo "id" >> explore_script.sh
echo "mount" >> explore_script.sh
echo "df -h" >> explore_script.sh
echo "cat /etc/fuse.conf" >> explore_script.sh
echo "dpkg -S /etc/fuse.conf" >> explore_script.sh
echo "dpkg -L fuse3" >> explore_script.sh
echo "fuse-overlayfs -V" >> explore_script.sh
echo "uname -a" >> explore_script.sh
chmod +x explore_script.sh
echo "touch /cvmfs/pilot.eessi-hpc.org/${fn}" > test_script.sh
chmod u+x test_script.sh
cp -a * /tmp/
cd /tmp
# export SINGULARITY_BIND="$PWD:/test"
singularity version
./build_container.sh run /tmp/$USER/EESSI /tmp/explore_script.sh
./build_container.sh run /tmp/$USER/EESSI /tmp/test_script.sh

# test use of '--access rw' to get write access in container
elif [[ ${{matrix.SCRIPT_TEST}} == rwdeb10 ]]; then
outfile0=out_readwrite0.txt
outfile=out_readwrite.txt
fn="test_${RANDOM}.txt"
container="docker://ghcr.io/eessi/build-node:debian10"
echo "ls -lisa /cvmfs /cvmfs/pilot.eessi-hpc.org" > explore_script.sh
echo "id" >> explore_script.sh
echo "mount" >> explore_script.sh
echo "df -h" >> explore_script.sh
echo "cat /etc/fuse.conf" >> explore_script.sh
echo "dpkg -S /etc/fuse.conf" >> explore_script.sh
echo "dpkg -L fuse3" >> explore_script.sh
echo "fuse-overlayfs -V" >> explore_script.sh
echo "uname -a" >> explore_script.sh
chmod +x explore_script.sh
echo "touch /cvmfs/pilot.eessi-hpc.org/${fn}" > test_script.sh
chmod u+x test_script.sh
export SINGULARITY_BIND="$PWD:/test"
singularity version
./eessi_container.sh --verbose --container ${container} --access rw --mode run /test/explore_script.sh 2>&1 | tee -a ${outfile0}
./eessi_container.sh --verbose --container ${container} --access rw --mode run /test/test_script.sh > ${outfile}

tmpdir=$(grep "\-\-resume" ${outfile} | sed "s/.*--resume \([^']*\).*/\1/g")
# note: must use '--access rw' again here, since touched file is in overlay upper dir
./eessi_container.sh --verbose --container ${container} --resume ${tmpdir} --access rw --mode shell <<< "ls -l /cvmfs/pilot.eessi-hpc.org/${fn}" > ${outfile}
grep "/cvmfs/pilot.eessi-hpc.org/${fn}$" $outfile

# test use of --resume
elif [[ ${{matrix.SCRIPT_TEST}} == 'resume' ]]; then
outfile=out_resume.txt
Expand Down