{2023.06}[2023a] MODFLOW 6.4.4 #507

casparvl · 2024-03-19T17:40:25Z

No description provided.

eessi-bot-aws · 2024-03-19T17:40:29Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

casparvl · 2024-03-19T17:41:13Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2024-03-19T17:41:15Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8323, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-19T17:41:19Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8323

date	job status	comment
Mar 19 17:41:18 UTC 2024	submitted	job id `8323` awaits release by job manager
Mar 19 17:41:21 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 19 17:45:52 UTC 2024	running	job `8323` is running
Mar 19 18:18:16 UTC 2024	finished	😢 FAILURE (click triangle for details) Reason EasyConfig not found during missing installation check. Are you sure all PRs referenced have been merged in EasyBuild? Details ✅ job output file `slurm-8323.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710872218.tar.gz` size: 162 MiB (170713096 bytes) entries: 301 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Hypre/2.29.0-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Hypre/2.29.0-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `SuiteSparse/7.1.0-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 19 18:18:16 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-19T20:40:56Z

== 2024-03-19 18:15:00,374 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): cmd "rm /cvmfs/softwa
re.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen3/software/SuperLU_DIST/8.1.2-foss-2023a/lib64/libsuperlu.a" exited with exit code 1 and output:
rm: cannot remove '/cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/amd/zen3/software/SuperLU_DIST/8.1.2-foss-2023a/lib64/libsuperlu.a': No su
ch file or directory

casparvl · 2024-03-19T22:22:32Z

Hm, seems the folder in our install is called <prefix>/lib instead of <prefix>/lib64. Not sure why...

{EESSI 2023.06} casparvl@x86-64-intel-haswell-node2 ~/support/pr507/software-layer/easystacks/software.eessi.io/2023.06 $ ls -al /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/SuperLU_DIST/8.1.2-foss-2023a/
include/ lib/
{EESSI 2023.06} casparvl@x86-64-intel-haswell-node2 ~/support/pr507/software-layer/easystacks/software.eessi.io/2023.06 $ ls -al /cvmfs/software.eessi.io/ver
sions/2023.06/software/linux/x86_64/intel/haswell/software/SuperLU_DIST/8.1.2-foss-2023a/lib
total 2676
drwxrwxr-x 4 casparvl casparvl     136 Mar 19 22:15 .
drwxrwxr-x 4 casparvl casparvl      52 Mar 19 22:15 ..
drwxrwxr-x 2 casparvl casparvl    4096 Mar 19 22:15 EXAMPLE
lrwxrwxrwx 1 casparvl casparvl     139 Mar 19 22:15 libsuperlu.a -> /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/SuperLU_DIST/8.1.2-foss-2023a/lib/libsuperlu_8.1.2.a
-rw-r--r-- 1 casparvl casparvl 2686996 Mar 19 22:14 libsuperlu_dist.a
-rw-r--r-- 1 casparvl casparvl   41114 Mar 19 22:15 libsuperlu_dist_fortran.a
drwxrwxr-x 2 casparvl casparvl      49 Mar 19 22:15 pkgconfig

…SSI#507 (comment)

casparvl · 2024-03-20T14:08:22Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2024-03-20T14:08:25Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8350, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-20T14:08:28Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8350

date	job status	comment
Mar 20 14:08:28 UTC 2024	submitted	job id `8350` awaits release by job manager
Mar 20 14:08:41 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 14:13:49 UTC 2024	running	job `8350` is running
Mar 20 14:49:55 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8350.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710946077.tar.gz` size: 181 MiB (190106424 bytes) entries: 397 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Hypre/2.29.0-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Hypre/2.29.0-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `SuiteSparse/7.1.0-foss-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 20 14:49:55 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-20T15:02:55Z

Well, it got past SuperLU_DIST this time, so some progres... :)

casparvl · 2024-03-20T15:47:50Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2024-03-20T15:47:53Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8353, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-20T15:47:57Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8353

date	job status	comment
Mar 20 15:47:56 UTC 2024	submitted	job id `8353` awaits release by job manager
Mar 20 15:48:59 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 15:50:04 UTC 2024	running	job `8353` is running
Mar 20 15:55:19 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8353.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710950043.tar.gz` size: 19 MiB (20412343 bytes) entries: 130 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `ParMETIS/4.0.3-gompi-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `ParMETIS/4.0.3-gompi-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 20 15:55:19 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-20T15:59:48Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2024-03-20T15:59:52Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8354, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-20T15:59:56Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8354

date	job status	comment
Mar 20 15:59:55 UTC 2024	submitted	job id `8354` awaits release by job manager
Mar 20 16:00:28 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 16:01:33 UTC 2024	running	job `8354` is running
Mar 20 16:03:40 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8354.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710950561.tar.gz` size: 0 MiB (206254 bytes) entries: 3 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen3/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 20 16:03:40 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-20T16:06:22Z

ERROR: Failed to get data for PR #20162 from easybuilders/easybuild-easyconfigs (HTTP Error 403: rate limit exceeded)
Please check PR #, account and repo.

I guess it's telling me it's time to quit for today...

casparvl · 2024-03-20T21:48:20Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-aws · 2024-03-20T21:48:23Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8355, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-20T21:48:26Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8355

date	job status	comment
Mar 20 21:48:25 UTC 2024	submitted	job id `8355` awaits release by job manager
Mar 20 21:48:39 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 21:52:46 UTC 2024	running	job `8355` is running
Mar 20 23:06:06 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8355.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710975893.tar.gz` size: 211 MiB (221918690 bytes) entries: 8298 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Hypre/2.29.0-foss-2023a.lua` `MODFLOW/6.4.4-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `PETSc/3.20.3-foss-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Hypre/2.29.0-foss-2023a` `MODFLOW/6.4.4-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `PETSc/3.20.3-foss-2023a` `SuiteSparse/7.1.0-foss-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 20 23:06:06 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-20T23:21:51Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot-aws · 2024-03-20T23:21:54Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 8364, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 8365, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8366, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 8367, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 8368, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 8369, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 8370, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-20T23:21:58Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8364

date	job status	comment
Mar 20 23:21:57 UTC 2024	submitted	job id `8364` awaits release by job manager
Mar 20 23:22:51 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 23:27:34 UTC 2024	running	job `8364` is running
Mar 21 00:48:13 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8364.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1710981985.tar.gz` size: 189 MiB (198872680 bytes) entries: 8298 modules under 2023.06/software/linux/aarch64/generic/modules/all `Hypre/2.29.0-foss-2023a.lua` `MODFLOW/6.4.4-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `PETSc/3.20.3-foss-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `Hypre/2.29.0-foss-2023a` `MODFLOW/6.4.4-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `PETSc/3.20.3-foss-2023a` `SuiteSparse/7.1.0-foss-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 21 00:48:13 UTC 2024	test result	(no tests yet)

eessi-bot-aws · 2024-03-20T23:22:01Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8365

date	job status	comment
Mar 20 23:22:00 UTC 2024	submitted	job id `8365` awaits release by job manager
Mar 20 23:22:52 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 23:27:37 UTC 2024	running	job `8365` is running
Mar 21 00:48:15 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8365.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710981971.tar.gz` size: 190 MiB (199539496 bytes) entries: 8298 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Hypre/2.29.0-foss-2023a.lua` `MODFLOW/6.4.4-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `PETSc/3.20.3-foss-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Hypre/2.29.0-foss-2023a` `MODFLOW/6.4.4-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `PETSc/3.20.3-foss-2023a` `SuiteSparse/7.1.0-foss-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 21 00:48:15 UTC 2024	test result	(no tests yet)

eessi-bot-aws · 2024-03-20T23:22:04Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8366

date	job status	comment
Mar 20 23:22:04 UTC 2024	submitted	job id `8366` awaits release by job manager
Mar 20 23:22:54 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 20 23:28:48 UTC 2024	running	job `8366` is running
Mar 20 23:41:14 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8366.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710977768.tar.gz` size: 18 MiB (19167624 bytes) entries: 130 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `ParMETIS/4.0.3-gompi-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `ParMETIS/4.0.3-gompi-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 20 23:41:14 UTC 2024	test result	(no tests yet)

…sue - we'll strip it before merging

…x the issue

casparvl · 2024-03-26T18:01:54Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:01:57Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:02:01Z

error: patch failed: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml:52 error: easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.0-2023a.yml: patch does not apply Unable to download or merge changes between the source branch and the destination branch.Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

casparvl · 2024-03-26T18:05:14Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T18:05:16Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8604, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-26T18:05:20Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8604

date	job status	comment
Mar 26 18:05:19 UTC 2024	submitted	job id `8604` awaits release by job manager
Mar 26 18:06:12 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 18:11:02 UTC 2024	running	job `8604` is running
Mar 26 20:10:47 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8604.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711482961.tar.gz` size: 2272 MiB (2383008561 bytes) entries: 6225 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `GCCcore/12.3.0.lua` `GCCcore/13.2.0.lua` `OpenMPI/4.1.4-GCC-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `GCCcore/12.3.0` `GCCcore/13.2.0` `OpenMPI/4.1.4-GCC-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp` `.lmod/SitePackage.lua`
Mar 26 20:10:47 UTC 2024	test result	(no tests yet)

casparvl · 2024-03-26T21:55:30Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T21:55:32Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8633, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-26T21:55:36Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8633

date	job status	comment
Mar 26 21:55:35 UTC 2024	submitted	job id `8633` awaits release by job manager
Mar 26 21:56:21 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 22:00:37 UTC 2024	running	job `8633` is running
Mar 27 00:02:24 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8633.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711496170.tar.gz` size: 2268 MiB (2378289871 bytes) entries: 5008 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `GCCcore/12.3.0.lua` `GCCcore/13.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `GCCcore/12.3.0` `GCCcore/13.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 27 00:02:24 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8633.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

… some variables when used in single brackets to get rid of '[: too many arguments' errors

casparvl · 2024-03-26T22:18:52Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-26T22:18:55Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8634, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-26T22:18:59Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8634

date	job status	comment
Mar 26 22:18:58 UTC 2024	submitted	job id `8634` awaits release by job manager
Mar 26 22:19:47 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 26 22:25:06 UTC 2024	running	job `8634` is running
Mar 26 22:49:02 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8634.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Mar 26 22:49:02 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8634.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…ure they happen first

casparvl · 2024-03-27T12:35:41Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot-aws · 2024-03-27T12:35:44Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from casparvl
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8666, for details & status see {2023.06}[2023a] MODFLOW 6.4.4 #507 (comment)

eessi-bot-aws · 2024-03-27T12:35:48Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_507/8666

date	job status	comment
Mar 27 12:35:47 UTC 2024	submitted	job id `8666` awaits release by job manager
Mar 27 12:36:17 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 27 12:41:20 UTC 2024	running	job `8666` is running
Mar 27 15:24:52 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8666.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711551876.tar.gz` size: 2452 MiB (2572019563 bytes) entries: 13300 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `GCCcore/12.3.0.lua` `GCCcore/13.2.0.lua` `Hypre/2.29.0-foss-2023a.lua` `MODFLOW/6.4.4-foss-2023a.lua` `netCDF-Fortran/4.6.1-gompi-2023a.lua` `ParMETIS/4.0.3-gompi-2023a.lua` `PETSc/3.20.3-foss-2023a.lua` `SuiteSparse/7.1.0-foss-2023a.lua` `SuperLU_DIST/8.1.2-foss-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `GCCcore/12.3.0` `GCCcore/13.2.0` `Hypre/2.29.0-foss-2023a` `MODFLOW/6.4.4-foss-2023a` `netCDF-Fortran/4.6.1-gompi-2023a` `ParMETIS/4.0.3-gompi-2023a` `PETSc/3.20.3-foss-2023a` `SuiteSparse/7.1.0-foss-2023a` `SuperLU_DIST/8.1.2-foss-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Mar 27 15:24:52 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8666.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-03-27T14:19:38Z

Looking at the logs for 8666 I see some failures already. Removal seems ok:

ESC[33mRemoving /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/12.3.0 and /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/modules/all/GCCcore/12.3.0.lua...ESC[0m
ESC[33mRemoving /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/13.2.0 and /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/modules/all/GCCcore/13.2.0.lua...ESC[0m
ESC[33mRemoving /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/casacore/3.5.0-foss-2023b and /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/modules/all/casacore/3.5.0-foss-2023b.lua...ESC[0m

But then during the build stage:

== FAILED: Installation ended unsuccessfully (build directory: /tmp/bot/easybuild/build/casacore/3.5.0/foss-2023b): build failed (first 300 chars): Failed to remove directory /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/casacore/3.5.0-fos
s-2023b even after 3 attempts.
Reasons: [OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty')] (took 7 mins 17 secs)
== Results of the build can be found in the log file(s) /tmp/eb-of5ilsfr/eb-y7tejh1a/easybuild-casacore-3.5.0-20240327.135951.IOxJZ.log
ERROR: Build of /tmp/eb-of5ilsfr/eb-y7tejh1a/files_pr19840/c/casacore/casacore-3.5.0-foss-2023b.eb failed (err: "build failed (first 300 chars): Failed to remove directory /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/casacore/3.5.0-foss-2023b even after 3 attempts.\nReasons: [OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty'), OSError(39, 'Directory not empty')]")

Well... that's strange... that's the directory that should have been removed in the removal stage (and it said it did...). Is there an rm command in the install step somehow, that simply fails to execute now? I guess I'll have to go into the tarball when the build finishes and check what is in that path...

casparvl · 2024-03-27T23:11:30Z

The artifacts here show that at least MODFLOW builds after the GCC rebuild. I.e. this is proof that the issue is resolved by the rebuild.

casparvl · 2024-03-27T23:23:24Z

I'll close this to keep this branch as a record of the issue - and it's solution - with the GCC vectorization on neoverse_v1. I'll open new issues to rebuild GCCcore and to build MODFLOW.

Add MODFLOW-6.4.4

971680e

casparvl changed the title ~~Add MODFLOW-6.4.4~~ {2023.06}[2023a] MODFLOW 6.4.4 Mar 19, 2024

Build SuperLU first from a PR with the fix of our earlier issue in EE…

6a75fad

…SSI#507 (comment)

Add PETSc as explicit build item, since it needs an EasyBlock change

60ef117

Fix typo

7ad8d02

Caspar van Leeuwen added 2 commits March 26, 2024 18:19

Rebuild GCCcore, include a casacore rebuild to prove it solves the is…

b18d458

…sue - we'll strip it before merging

Strip fix for casacore for now, to show that a GCCcore rebuild can fi…

106d615

…x the issue

Merge branch '2023.06-software.eessi.io' into modflow

332d02a

trz42 mentioned this pull request Mar 26, 2024

Some CI fails when it installs Apptainer 1.3.0 #517

Closed

Caspar van Leeuwen added 2 commits March 26, 2024 22:51

Merge branch '2023.06-software.eessi.io' into modflow

9122f50

Add newline at end of file

eedc0a8

Make sure rebuilds are done before other EasyStack files. Also, quote…

1230981

… some variables when used in single brackets to get rid of '[: too many arguments' errors

Caspar van Leeuwen and others added 2 commits March 27, 2024 13:32

loop over all_changed_easystacks, to include the rebuilds, and make s…

4c895d1

…ure they happen first

Merge branch '2023.06-software.eessi.io' into modflow

a895e7d

trz42 mentioned this pull request Mar 27, 2024

Fix rebuild check in bot/build.sh script, and always resume from the correct temporary directory #518

Merged

casparvl mentioned this pull request Mar 27, 2024

Rebuild GCCcore-12.3.0 and 13.2.0 to fix aarch64 vectorization issue #521

Merged

casparvl closed this Mar 27, 2024

{2023.06}[2023a] MODFLOW 6.4.4 #507

{2023.06}[2023a] MODFLOW 6.4.4 #507

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