Version bump, degrading a warning message to debug

EI-CoreBioinformatics · Jul 12, 2018 · 8e5e96b · 8e5e96b
1 parent 4eaa42b
commit 8e5e96b
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Showing 2 changed files with 2 additions and 13 deletions.
diff --git a/Mikado/__init__.py b/Mikado/__init__.py
@@ -10,7 +10,7 @@
 __author__ = 'Luca Venturini'
 __license__ = 'GPL3'
 __copyright__ = 'Copyright 2015-2016 Luca Venturini'
-__version__ = "1.2.2"
+__version__ = "1.2.3"
 
 __all__ = ["configuration",
            "exceptions",

diff --git a/Mikado/transcripts/transcriptchecker.py b/Mikado/transcripts/transcriptchecker.py
@@ -207,7 +207,7 @@ def check_strand(self):
 
                 else:
                     self.mixed_splices = True
-                    self.logger.warning("Transcript %s has %d positive and %s negative splice junctions",
+                    self.logger.debug("Transcript %s has %d positive and %s negative splice junctions",
                                         self.id,
                                         canonical_counter["+"],
                                         canonical_counter["-"])
@@ -226,17 +226,6 @@ def check_strand(self):
             elif canonical_counter["-"] > 0:
                 self.reverse_strand()
                 self.reversed = True
-            # elif canonical_counter["-"] > 0 and self.strand_specific is True:
-            #     self.logger.warning(
-            #         "Transcript %s has been assigned to the wrong strand, tagging it but leaving it on this strand.",
-            #         self.id)
-            #     self.attributes["canonical_on_reverse_strand"] = True
-            # elif self.strand_specific is False:
-            # assert canonical_counter["+"] + canonical_counter[None] == len(self.introns)
-
-            # self.attributes["canonical_splices"] = ",".join(
-            #     str(k) for k in canonical_index.keys() if
-            #     canonical_index[k] in ("+", "-"))
 
             if canonical_counter["+"] >= canonical_counter["-"] or (
                             max(canonical_counter["-"], canonical_counter["+"]) > 0 and self.strand_specific is True):