Moved to using 350 not 250 as threshold for complex loci

EI-CoreBioinformatics · Feb 18, 2016 · dc8c519 · dc8c519
1 parent 35905bd
commit dc8c519
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/mikado_lib/loci_objects/abstractlocus.py b/mikado_lib/loci_objects/abstractlocus.py
@@ -402,13 +402,13 @@ def find_communities(cls, graph: networkx.Graph, logger=None) -> (list, list):
         # # counter = 0
         # # communities = []
 
-        if len(graph) > 250:
+        if len(graph) > 350:
             logger.warning("Complex locus in %s, switching to approximate algorithm",
                            logger.name)
             new_graph = graph.copy()
             cliques = []
             cycle = 0
-            while len(new_graph) > 250:
+            while len(new_graph) > 350:
                 cycle += 1
                 logger.debug("In cycle no. %d of approximate algorithm for %s, graph length: %d",
                                cycle, logger.name, len(new_graph))

diff --git a/mikado_lib/loci_objects/superlocus.py b/mikado_lib/loci_objects/superlocus.py
@@ -597,7 +597,7 @@ def define_subloci(self):
                                              cds_only=cds_only)
         self.logger.debug("Calculated the transcript graph")
         self.logger.debug("Calculating the transcript communities")
-        if len(transcript_graph) > 250:
+        if len(transcript_graph) > 350:
             self.complex = True
 
         _, subloci = self.find_communities(transcript_graph, logger=self.logger)