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@lucventurini lucventurini released this 01 Oct 00:35
· 1793 commits to master since this release
0.8.8
b588a36

Changelog:

  • redesigned BLAST HSP checks before splitting; now we should be able to call a fusion even when there are hits in common. Parameter: min_overlap_duplication in the config.
  • Redesigned the retained_intron method, now it is quite better and cleaner.
  • switched to the example region in Chr5 for the sample data. Kept old files anyway.
  • Now the AS events have a ccode tag attached (compared to the primary transcript)
  • BF, very serious, on scores assigned to transcripts in loci with only 1 sequence.
  • BF for primary transcripts not correctly annotated.
  • BF for redundancy in AS events retrieval.
  • GFF output now is completely GT-validated.
  • Added logs for the serialisation step.
Assets 2