Tidying the house configuration
Tidying the house configuration
Main changes since 0.9.1:
- Worked with Dan to fix PortCullis (v. 0.10) and junction loading
- transitioned most of the options to the configuration file
- completed work on using JSON schemas to check / generate / insert missing values for configuration files.
- Prepare now chucks out transcript with mixed strands in every case, and tags the proportion of introns which are canonical.