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Tidying the house configuration

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@lucventurini lucventurini released this 16 Oct 13:17
· 1751 commits to master since this release

Tidying the house configuration

Main changes since 0.9.1:

  • Worked with Dan to fix PortCullis (v. 0.10) and junction loading
  • transitioned most of the options to the configuration file
  • completed work on using JSON schemas to check / generate / insert missing values for configuration files.
  • Prepare now chucks out transcript with mixed strands in every case, and tags the proportion of introns which are canonical.