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hpc_config.json
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hpc_config.json
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{
"__default__": {
"partition": "ei-medium",
"memory": "8192",
"cores": "8",
"J": "minos",
"time": "24:00:00",
"exclude": "t384n1"
},
"minos_mikado_prepare": {
"memory": "122880",
"cores": "30",
"J": "minos_mprep"
},
"minos_metrics_cpc2": {
"memory": "20480",
"cores": "4",
"J": "minos_met_cpc2"
},
"minos_metrics_kallisto_index": {
"memory": "12288",
"cores": "1",
"J": "minos_met_kallisto_index"
},
"minos_metrics_kallisto_quant": {
"memory": "61440",
"cores": "32",
"J": "minos_met_kallisto_quant"
},
"minos_metrics_mikado_compare_vs_all": {
"memory": "30720",
"cores": "1",
"J": "minos_met_mikado_compare_all"
},
"minos_metrics_mikado_compare_vs_proteins": {
"memory": "30720",
"cores": "1",
"J": "minos_met_mikado_cmp_prot"
},
"minos_metrics_mikado_compare_vs_transcripts": {
"memory": "30720",
"cores": "1",
"J": "minos_met_mikado_cmp_tran"
},
"minos_mikado_compare_index_reference": {
"memory": "8192",
"cores": "1",
"J": "minos_mikado_cmp_index"
},
"minos_metrics_blastp_mkdb": {
"memory": "10240",
"cores": "1",
"J": "minos_met_makeblastdb"
},
"minos_chunk_proteins": {
"memory": "2048",
"cores": "1",
"J": "minos_chunk_cds"
},
"minos_gffread_extract_sequences": {
"memory": "2048",
"cores": "1",
"J": "minos_generate_cds"
},
"minos_metrics_blastp_chunked": {
"memory": "32768",
"cores": "8",
"J": "minos_met_blastp"
},
"minos_metrics_blastp_tophit": {
"cores": "1",
"memory": "4096",
"J": "minos_met_blastp_tophit"
},
"minos_mikado_serialise": {
"cores": "32",
"memory": "125952",
"J": "minos_mikado_serialise"
},
"minos_mikado_pick": {
"cores": "30",
"memory": "125952",
"J": "minos_mikado_pick"
},
"minos_kallisto_index_post_pick": {
"memory": "12288",
"cores": "1",
"J": "minos_met_kallisto_index_post_pick"
},
"minos_kallisto_quant_post_pick": {
"memory": "61440",
"cores": "32",
"J": "minos_met_kallisto_quant_post_pick"
},
"minos_gff_validate_post_gt": {
"memory": "2048",
"cores": "1",
"J": "minos_gff_validate_post_gt"
},
"minos_collapse_metrics": {
"memory": "2048",
"cores": "1",
"J": "minos_collapse_metrics"
},
"minos_create_release_gffs": {
"memory": "2048",
"cores": "1",
"J": "minos_create_release_gffs"
},
"minos_sort_release_gffs": {
"memory": "2048",
"cores": "1",
"J": "minos_sort_release_gffs"
},
"minos_final_sanity_check": {
"memory": "2048",
"cores": "1",
"J": "minos_final_sanity_check"
},
"minos_generate_mikado_stats": {
"memory": "2048",
"cores": "1",
"J": "minos_generate_mikado_stats"
},
"minos_extract_final_sequences": {
"memory": "2048",
"cores": "1",
"J": "minos_extract_final_sequences"
},
"minos_extract_final_transcripts": {
"memory": "2048",
"cores": "1",
"J": "minos_extract_final_sequences"
},
"minos_extract_final_proteins": {
"memory": "2048",
"cores": "1",
"J": "minos_extract_final_proteins"
},
"busco_proteins_prepare": {
"memory": "8192",
"cores": "8",
"J": "minos_busco_proteins_prepare"
},
"busco_proteins_final": {
"memory": "8192",
"cores": "8",
"J": "minos_busco_proteins_final"
},
"busco_transcripts_prepare": {
"memory": "8192",
"cores": "8",
"J": "minos_busco_transcripts_prepare"
},
"busco_transcripts_final": {
"memory": "8192",
"cores": "8",
"J": "minos_busco_transcripts_final"
},
"busco_genome": {
"memory": "8192",
"cores": "8",
"J": "minos_busco_genome"
},
"minos_metrics_bedtools_repeat_coverage": {
"memory": "8192",
"cores": "1",
"J": "minos_metrics_bedtools_repeat_coverage"
},
"minos_metrics_blastp_combine": {
"memory": "4096",
"cores": "1",
"J": "minos_metrics_blastp_combine"
},
"minos_generate_final_table": {
"memory": "4096",
"cores": "1",
"J": "minos_generate_final_table"
},
"minos_generate_tx2gene_maps": {
"memory": "4096",
"cores": "1",
"J": "minos_generate_tx2gene_maps"
},
"minos_metrics_generate_metrics_matrix": {
"memory": "4096",
"cores": "1",
"J": "minos_metrics_generate_metrics_matrix"
}
}