Update singularity definitions #59
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dadrasarmin
commented
Jul 21, 2022
dadrasarmin
commented
- Added a Singularity definition file for Mikado. I could not one on this repo.
- Changed the Singularity definition files for Minos.tools and Busco. With these changes the singularity can be build via remote builder or on a VM via a mac machine.
- Changed the Augustus path in minos_config.yaml, due to the changes in paths of Augustus installation in Singularity.busco.def.
I could not build an executive file with the previous definition file on remote builder or mac os. I guess there are some dependencies on a specific linux distribution. Be careful, this definition will install the latest version from bioconda. Please change the augustus_config_data in minos_config.yaml to /opt/conda/config
Change the augustus configuration directory to work well with changes in singularity definitions.
A singularity definition to build mikado and its dependencies.
I could not build a singularity container based on the previous definition via a mac or remote builder. I ran a successful test with the container build by this new definition.
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Thanks @dadrasarmin for PR. Much appreciated! From a quick look, I can see that you have changed the BUSCO version and we have not tested it yet as we have seen issues where the BUSCO database format and directory structures are different between releases. I will have a detailed look later (mostly next week) |
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