v0.2.4

• added --use-netrc to use ~/.netrc file to handle HTTP username/password more securely

v0.2.3.4

• Bug fix for --file-db for Caper server when it's defined in cmd line args

v0.2.3.3

• Bug fix for Cromwell server IP address. (None -> localhost by default)
• Update README

v0.2.3.2

• Default singularity_cachedir at ~/.caper/singularity_cachedir
• Updated README

v0.2.3

• Caper defaults to use a file DB. You can still use MySQL DB.

v0.2.2

• added subcommand troubleshoot which will show list of errors that occurred during runtime.
• can have local relative paths in input JSON

v0.2.1.1

• Bug fixes

  • --out-dir didn't work with slurm, sge, pbs backends
  • --singularity-cachedir didn't work correctly if SINGULARITY_CACHEDIR env var is already defined.

• added --no-build-singularity to prevent building singularity image before running a pipeline.

  • but this can lead to conflicts between tasks trying to build their own local singularity image on the same target location.

v0.2.0

• bug fix for singularity

  • added --singularity-cachedir to prevent repeatedly building image for every WDL task.
  • automatically calculate SINGULARITY_BINDPATH based on files in input JSON file
    • by finding common roots of those files

• CaperURI

  • more robust method to catch HTTP_ERROR_CODE from cURL.

v0.1.9

some change in PIP description, nothing else

v0.1.8

• Use md5sum in hashlib instead of randomized hash() for directory suffix when downloading URLs.