Easily focus the view on selected elements from a Labels layer to inspect them.
- The plugin works on 2D and 3D images.
- The table shows the label index and volume (number of pixels) of each label.
- Click on the table rows to focus the view on the corresponding label.
- The table is updated when layers are added or removed from the viewer, selected from the dropdown, and when their data is modified.
- The table is sorted by volume (biggest object on top).
- You can save the table as a CSV file.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
You can install napari-label-focus via pip:
pip install napari-label-focus
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-label-focus" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.
This napari plugin is an output of a collaborative project between the EPFL Center for Imaging and the De Palma Lab in 2023.