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Merge pull request #46 from cehbrecht/added-demo-notebooks
added demo notebooks
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Readme | ||
====== | ||
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placeholder for _static folder. |
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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"# Subset CMIP5 Datasets with xarray\n", | ||
"\n", | ||
"xarray: http://xarray.pydata.org/en/stable/index.html" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"## Search CMIP5 Dataset with ESGF pyclient\n", | ||
"\n", | ||
"using: https://esgf-pyclient.readthedocs.io/en/latest/index.html" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"from pyesgf.search import SearchConnection\n", | ||
"conn = SearchConnection('https://esgf-data.dkrz.de/esg-search', distrib=True)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"ctx = conn.new_context(\n", | ||
" project='CMIP5', \n", | ||
" experiment='rcp45',\n", | ||
" model='HadCM3',\n", | ||
" ensemble='r1i1p1',\n", | ||
" time_frequency='mon',\n", | ||
" realm='atmos',\n", | ||
" data_node='esgf-data1.ceda.ac.uk',\n", | ||
" )\n", | ||
"ctx.hit_count" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"result = ctx.search()[0]\n", | ||
"result.dataset_id" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"files = result.file_context().search()\n", | ||
"for file in files:\n", | ||
" if 'tasmax' in file.opendap_url:\n", | ||
" tasmax_url = file.opendap_url\n", | ||
" print(tasmax_url)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"## ESGF Logon" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"from pyesgf.logon import LogonManager\n", | ||
"lm = LogonManager()\n", | ||
"lm.logoff()\n", | ||
"lm.is_logged_on()" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"lm.logon(hostname='esgf-data.dkrz.de', interactive=True, bootstrap=True)\n", | ||
"lm.is_logged_on()" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"## Subset single dataset with xarray\n", | ||
"\n", | ||
"Using OpenDAP: http://xarray.pydata.org/en/stable/io.html?highlight=opendap#opendap" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"import xarray as xr\n", | ||
"ds = xr.open_dataset(tasmax_url, chunks={'time': 120})\n", | ||
"print(ds)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"da = ds['tasmax']\n", | ||
"da = da.isel(time=slice(0, 1))\n", | ||
"da = da.sel(lat=slice(-50, 50), lon=slice(0, 50))\n" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"%matplotlib inline\n", | ||
"da.plot()" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": {}, | ||
"source": [ | ||
"## Download to NetCDF" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"da.to_netcdf('tasmax.nc')" | ||
] | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "Python 3", | ||
"language": "python", | ||
"name": "python3" | ||
}, | ||
"language_info": { | ||
"codemirror_mode": { | ||
"name": "ipython", | ||
"version": 3 | ||
}, | ||
"file_extension": ".py", | ||
"mimetype": "text/x-python", | ||
"name": "python", | ||
"nbconvert_exporter": "python", | ||
"pygments_lexer": "ipython3", | ||
"version": "3.7.3" | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 4 | ||
} |
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