Allow running Eyesis_Correction and JP46_Reader_camera in headless mode #2
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Plugins must not extend or instantiate frames in order to be run in headless mode,
they must implement "PlugIn" and the entry point should be method run(); AFIK
- Eyesis_Correction can now be run from macro:
run("Eyesis Correction","prefs=<path_to_xml>");
- or in headless mode from Fidji command line:
ImageJ-linux64 --headless --run Eyesis_Correction prefs=<path_to_xml> ...
…to tiff_compression
F0x06
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AndreyFilippov
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Jan 4, 2016
Allow running Eyesis_Correction and JP46_Reader_camera in headless mode
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Hello Andrey, Oleg !
We can now dispatch the post-processing on several computers or run multiple ImageJ instances, without X being required, using Fiji headless mode (Fiji is just ImageJ: http://fiji.sc)
ImageJ plugins must not extend or instantiate frames in order to be run in headless mode (thanks to dscho for raising the issue),
Beside this they should implement "PlugIn" and the entry point should be method run();
run("Eyesis Correction","prefs=<path_to_xml>");
ImageJ-linux64 --headless --allow-multiple --run Eyesis_Correction prefs=<path_to_xml> --mem ...
Run the post-processing interactively the first time for a single set of images (to set all the paths for calibration data and other parameters), then use corrxml (https://github.com/FoxelSA/corrxml) to generate the Eyesis_Correction.xml preference files for other sets of images, using the same parameters.
Cheers !