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Endesfelder-Lab

Popular repositories

  1. SMLMComputational SMLMComputational Public

    Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy", Martens et al., (2022), Frontiers in Bi…

    MATLAB 10 5

  2. Kinetochore_Distances Kinetochore_Distances Public

    Code to approximate the posterior distribution of CENP-A-POI distances according to our kinetochore model using STAN, published in "Unraveling the kinetochore nanostructure in Schizosaccharomyces p…

    Stan

  3. NeNA NeNA Public

    Code and data belonging to "A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment ", Endesfelder et al., (2014), Histochemistry and …

    Python

  4. frametoframedrift frametoframedrift Public

    Code belonging to "Combining Single-molecule and Expansion microscopy in fission Yeast (SExY) to visualize protein structures at the nanostructural level", Vojnovic et al. (2024), Open Biology (doi…

    Python

  5. TARDIS-public TARDIS-public Public

    Code belonging to “Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking” by Martens et al. (2024), Nature Methods, https://www.nature…

    MATLAB

Repositories

Showing 5 of 5 repositories
  • frametoframedrift Public

    Code belonging to "Combining Single-molecule and Expansion microscopy in fission Yeast (SExY) to visualize protein structures at the nanostructural level", Vojnovic et al. (2024), Open Biology (doi.org/10.1098/rsob.230414)

    Python 0 GPL-3.0 0 0 0 Updated Apr 19, 2024
  • TARDIS-public Public

    Code belonging to “Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking” by Martens et al. (2024), Nature Methods, https://www.nature.com/articles/s41592-023-02149-7

    MATLAB 0 0 0 0 Updated Jan 23, 2024
  • NeNA Public

    Code and data belonging to "A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment ", Endesfelder et al., (2014), Histochemistry and Cell Biology 141.

    Python 0 GPL-3.0 0 0 0 Updated May 19, 2023
  • Kinetochore_Distances Public

    Code to approximate the posterior distribution of CENP-A-POI distances according to our kinetochore model using STAN, published in "Unraveling the kinetochore nanostructure in Schizosaccharomyces pombe using multi-color single-molecule localization microscopy", Virant et al., 2023, JCB, https://doi.org/10.1083/jcb.202209096

    Stan 0 0 0 0 Updated May 10, 2023
  • SMLMComputational Public

    Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy", Martens et al., (2022), Frontiers in Bioinformatics (https://www.frontiersin.org/articles/10.3389/fbinf.2021.817254).

    MATLAB 10 GPL-3.0 5 1 0 Updated Mar 7, 2022

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