Endesfelder-Lab
Popular repositories
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SMLMComputational
SMLMComputational PublicCode and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy", Martens et al., (2022), Frontiers in Bi…
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Kinetochore_Distances
Kinetochore_Distances PublicCode to approximate the posterior distribution of CENP-A-POI distances according to our kinetochore model using STAN, published in "Unraveling the kinetochore nanostructure in Schizosaccharomyces p…
Stan
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NeNA
NeNA PublicCode and data belonging to "A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment ", Endesfelder et al., (2014), Histochemistry and …
Python
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frametoframedrift
frametoframedrift PublicCode belonging to "Combining Single-molecule and Expansion microscopy in fission Yeast (SExY) to visualize protein structures at the nanostructural level", Vojnovic et al. (2024), Open Biology (doi…
Python
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TARDIS-public
TARDIS-public PublicCode belonging to “Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking” by Martens et al. (2024), Nature Methods, https://www.nature…
MATLAB
Repositories
- frametoframedrift Public
Code belonging to "Combining Single-molecule and Expansion microscopy in fission Yeast (SExY) to visualize protein structures at the nanostructural level", Vojnovic et al. (2024), Open Biology (doi.org/10.1098/rsob.230414)
- TARDIS-public Public
Code belonging to “Temporal analysis of relative distances (TARDIS) is a robust, parameter-free alternative to single-particle tracking” by Martens et al. (2024), Nature Methods, https://www.nature.com/articles/s41592-023-02149-7
- Kinetochore_Distances Public
Code to approximate the posterior distribution of CENP-A-POI distances according to our kinetochore model using STAN, published in "Unraveling the kinetochore nanostructure in Schizosaccharomyces pombe using multi-color single-molecule localization microscopy", Virant et al., 2023, JCB, https://doi.org/10.1083/jcb.202209096
- SMLMComputational Public
Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy", Martens et al., (2022), Frontiers in Bioinformatics (https://www.frontiersin.org/articles/10.3389/fbinf.2021.817254).
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