Experimenting with docs

docs/_getstarted/overview.py

@@ -0,0 +1,24 @@
+from pyenzyme import EnzymeMLDocument, Vessel, Protein, Reactant
+
+# Initialize the EnzymeMLDocument clas
+enzmldoc = EnzymeMLDocument(name="First example")
+
+# Create a vessel object
+vessel = Vessel(name="Falcon Tube", volume=10.0, unit="ml")
+vessel_id = enzmldoc.addVessel(vessel)
+
+# Create a protein object from the UniProt database (Alcohol Dehydrogenase)
+adh = Protein(
+    uniprotid="P07327", vessel_id=vessel_id,
+    init_conc=10.0, unit="mmole / l"
+)
+
+adh_id = enzmldoc.addProtein(adh)
+
+# Create a custom reactant object
+ethanol = Reactant(
+    name="Ethanol", vessel_id=vessel_id,
+    init_conc=20.0, unit="mmole / l"
+)
+
+ethanol_id = enzmldoc.addReactant(ethanol)

docs/_getstarted/overview.rst

@@ -0,0 +1,29 @@
+Overview
+========
+
+.. code-block:: python
+
+    from pyenzyme import EnzymeMLDocument, Vessel, Protein, Reactant
+
+    # Initialize the EnzymeMLDocument clas
+    enzmldoc = EnzymeMLDocument(name="First example")
+
+    # Create a vessel object
+    vessel = Vessel(name="Falcon Tube", volume=10.0, unit="ml")
+    vessel_id = enzmldoc.addVessel(vessel)
+
+    # Create a protein object from the UniProt database (Alcohol Dehydrogenase)
+    adh = Protein(
+        uniprotid="P07327", vessel_id=vessel_id,
+        init_conc=10.0, unit="mmole / l"
+    )
+
+    adh_id = enzmldoc.addProtein(adh)
+
+    # Create a custom reactant object
+    ethanol = Reactant(
+        name="Ethanol", vessel_id=vessel_id,
+        init_conc=20.0, unit="mmole / l"
+    )
+
+    ethanol_id = enzmldoc.addReactant(ethanol)

docs/index.rst

@@ -11,6 +11,7 @@ Welcome to PyEnzyme's documentation!
    :caption: First Steps
 
    _getstarted/01_Overview
+   _getstarted/overview.rst
 
 .. toctree:: 
    :maxdepth: 2