Fixed missing dependency error

Due to moving the Dataverse dependencies to "extra_requires" a ModuleNotFound error was introduced, which is now fixed by trying to import PyDaRUS when using the method

.github/workflows/build.yml

@@ -21,7 +21,7 @@ jobs:
         run: |
           python3 -m pip install --upgrade pip
           pip3 install python-copasi
-          pip3 install -e .[test]
+          pip3 install -e .[test,dataverse]
       - name: Test with pytest
         run: |
           python3 -m pytest

pyenzyme/enzymeml/core/enzymemldocument.py

@@ -36,7 +36,6 @@
 from pyenzyme.enzymeml.tools.enzymemlwriter import EnzymeMLWriter
 from pyenzyme.enzymeml.tools.templatereader import read_template
 from pyenzyme.enzymeml.tools.validator import EnzymeMLValidator
-from pyenzyme.enzymeml.databases.dataverse import uploadToDataverse
 
 from pyenzyme.enzymeml.core.ontology import EnzymeMLPart, SBOTerm
 from pyenzyme.utils.log import setup_custom_logger, log_object
@@ -323,6 +322,14 @@ def uploadToDataverse(
             api_token (str): API Token of the dataverse to upload. Defaults to None. If None the API Token will be drawn from env vars.
 
         """
+
+        try:
+            from pyenzyme.enzymeml.databases.dataverse import uploadToDataverse
+        except ModuleNotFoundError:
+            raise ModuleNotFoundError(
+                "PyDaRUS has not been found. Please make sure to install 'pyDaRUS' to use the dataverse upload."
+            )
+
         uploadToDataverse(
             enzmldoc=self,
             dataverse_name=dataverse_name,

pyenzyme/enzymeml/databases/dataverse.py

@@ -9,6 +9,7 @@
 import pydantic
 
 from typing import Dict, Any, Optional
+
 from pyDaRUS import EnzymeMl, Citation, Dataset
 from pyDaRUS.metadatablocks.enzymeML import Constant
 from pyDaRUS.metadatablocks.citation import SubjectEnum