Added FastAPI Support

pyenzyme_server.py

@@ -0,0 +1,80 @@
+import os
+import shutil
+
+from fastapi import FastAPI
+from starlette.responses import FileResponse
+
+from pyenzyme.enzymeml.core.enzymemldocument import EnzymeMLDocument
+
+app = FastAPI()
+
+
+@app.post("/create")
+def create_EnzymeML(enzmldoc: EnzymeMLDocument):
+
+    def _convertUnits(dictionary: dict, key: str):
+        """Converts all units to unit_ids and stores them in the model"""
+        for obj in dictionary.values():
+            unit_string = obj.__dict__.get(key.replace("_id", "")[1::])
+            obj.__setattr__(
+                key,
+                enzmldoc._convertToUnitDef(unit_string)
+            )
+
+    # Convert all units
+    _convertUnits(enzmldoc.vessel_dict, "_unit_id")
+    _convertUnits(enzmldoc.protein_dict, "_unit_id")
+    _convertUnits(enzmldoc.reactant_dict, "_unit_id")
+    _convertUnits(enzmldoc.reaction_dict, "_temperature_unit_id")
+
+    # Convert all kinetic parameters
+    for reaction in enzmldoc.reaction_dict.values():
+        if reaction.model is None:
+            continue
+
+        params = {
+            param.name: param
+            for param in reaction.model.parameters
+        }
+
+        _convertUnits(params, "_unit_id")
+
+    # Convert measurment units
+    for measurement in enzmldoc.measurement_dict.values():
+        measurement._global_time_unit_id = enzmldoc._convertToUnitDef(
+            measurement.global_time_unit
+        )
+
+        proteins = measurement.getProteins()
+        reactants = measurement.getReactants()
+
+        _convertUnits({**proteins, **reactants}, "_unit_id")
+
+        # Convert replicates
+        all_replicates = {
+            replicate.replicate_id: replicate
+            for measurement_data in {**proteins, **reactants}.values()
+            for replicate in measurement_data.replicates
+        }
+
+        _convertUnits(all_replicates, "_data_unit_id")
+        _convertUnits(all_replicates, "_time_unit_id")
+
+    # Write the new EnzymeML file
+    try:
+        dirpath = "."
+        file_name = f"{enzmldoc.name.replace(' ', '_')}.omex"
+        file_path = os.path.join(
+            dirpath,
+            file_name
+        )
+
+        enzmldoc.toFile(dirpath)
+
+        return FileResponse(file_path, filename=file_name)
+
+    except Exception as e:
+        return str(e)
+
+    finally:
+        shutil.rmt