@EpistasisLab

Epistasis Lab at UPenn

Prof. Jason H. Moore's research lab at the University of Pennsylvania

  • A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

    Python 4,477 787 LGPL-3.0 Updated Aug 20, 2018
  • Blackfynn Utilities

    Python 1 Updated Aug 13, 2018
  • ebic

    Forked from athril/ebic

    EBIC - AI-based parallel biclustering algorithm

    C++ 7 3 MIT Updated Aug 10, 2018
  • Data simulation software that creates data sets with particular characteristics

    Python 3 2 MIT Updated Jul 18, 2018
  • A workshop for improve benchmarking standards in evolutionary computation research.

    MIT Updated Jul 3, 2018
  • A large benchmark study of recent symbolic regression methods

    Jupyter Notebook 2 GPL-3.0 Updated Jun 20, 2018
  • A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

    Python 137 22 MIT 6 issues need help Updated Jun 12, 2018
  • Python Updated Jun 11, 2018
  • Relief Based Algorithms of ReBATE implemented in Python with Cython optimization.

    Python 17 6 MIT Updated May 22, 2018
  • Analysis pipeline for quick ML analyses.

    Python 5 1 GPL-3.0 Updated Apr 19, 2018
  • A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.

    Python 374 60 MIT 3 issues need help Updated Feb 13, 2018
  • python-wrapped version of ellen, a linear genetic programming system for symbolic regression and classification.

    C++ 15 7 Updated Jan 12, 2018
  • ENSEMBL VEP on EC2

    Updated Dec 21, 2017
  • Population utilities for the VEPDB distributed annotation database, with an annotator written in Python

    Python 1 1 GPL-3.0 Updated Dec 8, 2017
  • Jupyter Notebook 3 4 Updated Dec 2, 2017
  • Scripts that I wrote for use on the Penn LPC

    Python 3 1 MIT Updated Nov 29, 2017
  • A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

    Python 68 12 MIT 2 issues need help Updated Nov 29, 2017
  • Collection of different gene expression datasets

    1 2 MIT Updated Nov 17, 2017
  • Proportional instance cross validation

    Updated Oct 9, 2017
  • A centralized repository to benchmark ReBATE performance across a variety of parameter settings and datasets.

    Jupyter Notebook 1 MIT Updated Oct 3, 2017
  • Jupyter Notebook 10 9 Updated Aug 7, 2017
  • Pages for workshops run by Epistasis Lab members

    4 MIT Updated Jul 15, 2017
  • few

    Forked from lacava/few

    a feature engineering wrapper for sklearn

    Python 1 11 GPL-3.0 Updated Jul 8, 2017
  • Identifying the complex genetic architectures of disease

    4 1 Updated May 18, 2017
  • Open or Easy Access Clinical Data Sources for Biomedical Research

    52 19 CC0-1.0 Updated Jan 5, 2017
  • tpot applications on kaggle datasets

    Jupyter Notebook 2 Updated Oct 12, 2016