#1689 ps_LST_tlv: avoid listing the path

ExploreASL · Apr 29, 2024 · 40c07e4 · 40c07e4
1 parent 7e2ad13
commit 40c07e4
Show file tree

Hide file tree

Showing 2 changed files with 21 additions and 5 deletions.
diff --git a/External/README_SPM.txt b/External/README_SPM.txt
@@ -16,13 +16,17 @@ DESCRIPTION (see #1324):
 Added *.mexmaca64
 Changed Makefile, Makefile.var, spm_platform
 
+
+
 *********************************************************************************************************
 MAP CHANGES
 DATE+Name: 2021-07-07 HM
 DESCRIPTION:
 /External/SPMmodified/toolbox/cat12/templates_volumes/cat_wmh_miccai2017.nii
 Was cleaned up (lower slices contained some messy low probabilities)
 
+
+
 *********************************************************************************************************
 ASL-SPECIFIC HACKS
 
@@ -35,6 +39,8 @@ ADDED:
 Line 1: added the extra option bZigzag
 Line 117,137,158,181,571: added extra routines for the Zigzag
 
+
+
 *********************************************************************************************************
 COST FUNCTION MASKING FOR LESIONS
 
@@ -44,6 +50,8 @@ hotfix minor bug in loading NIfTIs containing lesion masks in CAT12 #28
 FILE:
 cat_run_job.m at 577
 
+
+
 *********************************************************************************************************
 ENABLING LOW QUALITY MODE (FOR QUICK TESTING, RUN EVERYTHING BUT WITH LOWER ITERATIONS AND/OR SPATIAL RESOLUTION)
 
@@ -81,6 +89,8 @@ External/SPMmodified/toolbox/LST/ps_LST_lpa.m
 218: if xasl_quality is set to 0, load ps_LST_lpa_preproc_default_LowQ.m instead of ps_LST_lpa_preproc_default.m,
 likewise if xasl_quality is set to 2 (when WMH_SEGM pre-exists), load ps_LST_lpa_preproc_default_UltraLowQ.m
 
+
+
 *********************************************************************************************************
 REDUCE CODE SIZE
 
@@ -145,6 +155,7 @@ Line 132 - removed 'EEG'
 Line 135 - removed 'spm_cfg_eeg'
 
 
+
 *********************************************************************************************************
 IMAGE PROCESSING IMPROVEMENT
 
@@ -333,6 +344,8 @@ spm_smoothto8bit.m 57
 External/SPMmodified/toolbox/OldSeg/spm_maff.m line 106
 toolbox/cat12/cat_vol_correct_slice_scaling line 425
 
+
+
 *********************************************************************************************************
 BIDS/JSON
 
@@ -388,9 +401,15 @@ FILE:
 spm_jsonread.c at line 588 and all lines with mexErrMsgTxt, mexWarnMsgTxt, and mexPrintf.
 NOTE: Since version 1.11.0, spm_jsonwrite and spm_jsonread are not used anymore
 
+
+
 *********************************************************************************************************
 OTHER CODE HACKS
 
+DATE+NAME: 2024-04-28 HM (issue #1689)
+DESCRIPTION: avoid listing the path, which avoids seeing a comma in a path as delimiter
+FILE: ps_LST_tlv, 147 & 187
+
 DATE+NAME: 2021-03-10 MS (issue #408)
 DESCRIPTION: Missing version_matlab field in compiled xASL.
 FILE: cat_main_reportstr, 50-54
@@ -550,9 +569,6 @@ cat_main_register.m, lines 341, 554, 560, 687, 861, 865, 1168
 
 
 
-
-
-
 *********************************************************************************************************
 REDUCE GRAPHICAL OUTPUT & NON-SPECIFIC WARNINGS. ADD TRACKING PROGRESS AT COMMAND LINE: xASL_TrackProgress
 

diff --git a/External/SPMmodified/toolbox/LST/ps_LST_tlv.m b/External/SPMmodified/toolbox/LST/ps_LST_tlv.m
@@ -147,7 +147,7 @@
 % Create TLV file
 nameTLV = ['LST_tlv_', num2str(thr), '_', ps_create_timestamp, '.csv'];
 fileID = fopen(nameTLV, 'wt');
-fprintf(fileID, 'Path,FileName,LGA,TLV,N\n');
+fprintf(fileID, 'FileName,LGA,TLV,N\n');
 
 if ~void
     strout = 'Results are written to';
@@ -187,7 +187,7 @@
     else
         les_size = [];
     end    
-    fprintf(fileID, [pth, ',', name, ext, ',', num2str(lga(i)), ',', ...
+    fprintf(fileID, [name, ext, ',', num2str(lga(i)), ',', ...
          num2str(round(sum(les_size) * 1000) / 1000), ',', num2str(numel(les_size)), '\n']);