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ExploreASL v1.10.0
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@jan-petr jan-petr released this 26 Dec 18:52
· 325 commits to main since this release
v1.10.0
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jan-petr Jan Petr
GPG key ID: 28EDCEE9D5AD4E3C
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Versions included software

Versions included & used third-party tools (see /External/README_SPM.txt):

  • SPM12 7219
  • CAT12 r1615
  • LST 2.0.15
  • dcm2niix 20220720

Feature improvements

  • Release issue #1235: New release.
  • Feature #435: Update dcm2nii to version 20220720.
  • Feature #844: PVC maps calculated in native space are transformed to MNI space.
  • Features #927, #1046, #1055, #1059, #1167, #1218: DEBBIE sequence -- Hadamard multi-TE ASL - basic import and processing.
  • Feature #1011: Add Desikan-Killiany atlas.
  • Features #1115, #1044: Revamped Import. BIDS2Legacy conversion is now done as first step of the processing module.
  • Feature #1129: StudyPar supports multi-parameter definitions for import of multi-sequence datasets.
  • Feature #1197: Allow configuring the image contrast for statistics in dataPar.json.
  • Feature #1242: Correctly report errors in sourceStructure.json during import.

Bug fixes

  • Bugs #685, #1182: Fix issue with atlas names.
  • Bug #1068: Fix errors in susceptibility mask in xASL_im_CreateAnalysisMask.
  • Bugs #1079, #1161, #1162, #1253: General bugfixing ExploreASL.
  • Bug #1111: Disable M0 processing when M0 not present.
  • Bug #1117: Fix Spatial CoV sorting of ASL images.
  • Bug #1123: Avoid loading ExploreASL-related folder log as subject.
  • Bug #1138: Fix subject directory name parsing for M0.
  • Bug #1140: Handles an incorrect number of delimiters per line in TSV/CSV/DSV files loaded by spm_load.
  • Bug #1164: Fix a bug in xASL_adm_GzipAllFiles.
  • Bug #1187: Minor fix in xASL_csvWrite.
  • Bug #1254: Minor fix of Philips scaling.
  • Bugs #1256, #1271: Fix import, especially of FME and MacOS file-related issues.
  • Bug #1259: Fix native space analysis.
  • Bug #1262: Minor fix in Flavor-test script.

Optimization

  • Issue #390: Create directories for QC only when writing the files in them.
  • Issue #823: Cleaned unused functions in the Development folder.
  • Issue #995: xASL_num2str always outputs a row vector.
  • Issue #1040: Reorganize file structure of the code.
  • Issue #1050: Move final zipping inside population module to avoid parallel execution.
  • Issue #1105: Fixes input parameter checking at multiple locations and optimized internal variables.
  • Issue #1159: Improve spm_jsonread warnings and print file path.

Documentation

  • Issue #1075: Improve and restructure documentation.
  • Issue #1149: Move dataParTemplates to online Documentation.
  • Issue #1212: Improve explanation of studyPar.json and dataPar.json.
  • Issue #1222: Added a new email to readme exploreasl.lab@gmail.com.

Other improvements

  • Issue #1098: Skip requirement of BIDS quantification parameters when quantification not user accoridng to x.modules.asl.ApplyQuantification.
  • Issue #1108: Simplify README.md and add CFF citation of ExploreASL.
  • Issue #1112: Improve code comments in hematocrit correction.
  • Issue #1118: Improve FEAST quantification warnings.
  • Issue #1121: TestDataSet now contains BIDS rawdata only and no derivatives.
  • Issue #1124: Allow basic background-suppression correction for M0 in multi-PLD.
  • Issue #1134: Simplify script for version file reading.
  • Issue #1136: Improved error output for ASLContext not matching with NIfTI dimensions.
  • Issue #1142, #1153: Ignores JSON files or subdirectories in the root-directory input path.
  • Issue #1201: Added GE RX28 flavor.
Assets 2