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I can confirm this also affects Yocto Zeus (segfaults when using fftw). I did not investigate to the same extent as the submitter. I pulled gcc-8.3 back in as a work around for me.
Edit:
I've been told this issue is likely related to/duplicate of #182
Having recently run into this exact issue an alternative temporary solution, until this gets fixed in fftw, is to disable the neon architecture when building FFTW. This seems to resolve whatever the issue is and allows the use of the most recent GCC compilers in Zeus.
I am getting seg faults when I compile FFTW for a Zynq 1 processor part (ADRV9361-Z7035 SoM) using GCC 9.2 (https://developer.arm.com/-/media/Files/downloads/gnu-a/9.2-2019.12/binrel/gcc-arm-9.2-2019.12-x86_64-arm-none-linux-gnueabihf.tar.xz) and GCC 9.3 (cross-compiler built from Yocto Dunfell distribution) and NEON enabled. I do not have any issues when using GCC 8.3 (https://developer.arm.com/-/media/Files/downloads/gnu-a/8.3-2019.03/binrel/gcc-arm-8.3-2019.03-x86_64-arm-linux-gnueabihf.tar.xz). and other older versions of GCC that I tried (some pre-built Linaro toolchains).
The seg faults don't occur if I compile with GCC 9 and NEON disabled, but as expected performance is significantly diminished.
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