Extract the codes to src

FVCOM-GitHub · Feb 27, 2023 · e2a265c · e2a265c
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# FVCOM 5.0
+# FVCOM 4.3.1
 
 http://fvcom.smast.umassd.edu/
 

diff --git a/src/FVCOM_source/BIO_source/CVS/Entries → src/BIO_source/CVS/Entries b/src/FVCOM_source/BIO_source/CVS/Entries → src/BIO_source/CVS/Entries
diff --git a/...M_source/BIO_source/CVS/PaxHeader/Entries → src/BIO_source/CVS/PaxHeader/Entries b/...M_source/BIO_source/CVS/PaxHeader/Entries → src/BIO_source/CVS/PaxHeader/Entries
diff --git a/...ource/BIO_source/CVS/PaxHeader/Repository → src/BIO_source/CVS/PaxHeader/Repository b/...ource/BIO_source/CVS/PaxHeader/Repository → src/BIO_source/CVS/PaxHeader/Repository
diff --git a/...VCOM_source/BIO_source/CVS/PaxHeader/Root → src/BIO_source/CVS/PaxHeader/Root b/...VCOM_source/BIO_source/CVS/PaxHeader/Root → src/BIO_source/CVS/PaxHeader/Root
diff --git a/src/FVCOM_source/BIO_source/CVS/Repository → src/BIO_source/CVS/Repository b/src/FVCOM_source/BIO_source/CVS/Repository → src/BIO_source/CVS/Repository
diff --git a/src/FVCOM_source/BIO_source/CVS/Root → src/BIO_source/CVS/Root b/src/FVCOM_source/BIO_source/CVS/Root → src/BIO_source/CVS/Root
diff --git a/src/FVCOM_source/BIO_source/DOM.F → src/BIO_source/DOM.F b/src/FVCOM_source/BIO_source/DOM.F → src/BIO_source/DOM.F
diff --git a/src/FVCOM_source/BIO_source/PaxHeader/CVS → src/BIO_source/PaxHeader/CVS b/src/FVCOM_source/BIO_source/PaxHeader/CVS → src/BIO_source/PaxHeader/CVS
diff --git a/src/FVCOM_source/BIO_source/PaxHeader/DOM.F → src/BIO_source/PaxHeader/DOM.F b/src/FVCOM_source/BIO_source/PaxHeader/DOM.F → src/BIO_source/PaxHeader/DOM.F
diff --git a/...OM_source/BIO_source/PaxHeader/bacteria.F → src/BIO_source/PaxHeader/bacteria.F b/...OM_source/BIO_source/PaxHeader/bacteria.F → src/BIO_source/PaxHeader/bacteria.F
diff --git a/..._source/BIO_source/PaxHeader/bio_mixing.F → src/BIO_source/PaxHeader/bio_mixing.F b/..._source/BIO_source/PaxHeader/bio_mixing.F → src/BIO_source/PaxHeader/bio_mixing.F
diff --git a/..._source/BIO_source/PaxHeader/bio_model.in → src/BIO_source/PaxHeader/bio_model.in b/..._source/BIO_source/PaxHeader/bio_model.in → src/BIO_source/PaxHeader/bio_model.in
diff --git a/...rce/BIO_source/PaxHeader/bio_model_new.in → src/BIO_source/PaxHeader/bio_model_new.in b/...rce/BIO_source/PaxHeader/bio_model_new.in → src/BIO_source/PaxHeader/bio_model_new.in
diff --git a/...OM_source/BIO_source/PaxHeader/detritus.F → src/BIO_source/PaxHeader/detritus.F b/...OM_source/BIO_source/PaxHeader/detritus.F → src/BIO_source/PaxHeader/detritus.F
diff --git a/...ource/BIO_source/PaxHeader/detritus_ini.F → src/BIO_source/PaxHeader/detritus_ini.F b/...ource/BIO_source/PaxHeader/detritus_ini.F → src/BIO_source/PaxHeader/detritus_ini.F
diff --git a/...urce/BIO_source/PaxHeader/get_parameter.F → src/BIO_source/PaxHeader/get_parameter.F b/...urce/BIO_source/PaxHeader/get_parameter.F → src/BIO_source/PaxHeader/get_parameter.F
diff --git a/...VCOM_source/BIO_source/PaxHeader/makefile → src/BIO_source/PaxHeader/makefile b/...VCOM_source/BIO_source/PaxHeader/makefile → src/BIO_source/PaxHeader/makefile
diff --git a/...VCOM_source/BIO_source/PaxHeader/mod_1D.F → src/BIO_source/PaxHeader/mod_1D.F b/...VCOM_source/BIO_source/PaxHeader/mod_1D.F → src/BIO_source/PaxHeader/mod_1D.F
diff --git a/...COM_source/BIO_source/PaxHeader/mod_DOM.F → src/BIO_source/PaxHeader/mod_DOM.F b/...COM_source/BIO_source/PaxHeader/mod_DOM.F → src/BIO_source/PaxHeader/mod_DOM.F
diff --git a/...ource/BIO_source/PaxHeader/mod_bacteria.F → src/BIO_source/PaxHeader/mod_bacteria.F b/...ource/BIO_source/PaxHeader/mod_bacteria.F → src/BIO_source/PaxHeader/mod_bacteria.F
diff --git a/..._source/BIO_source/PaxHeader/mod_bioinp.F → src/BIO_source/PaxHeader/mod_bioinp.F b/..._source/BIO_source/PaxHeader/mod_bioinp.F → src/BIO_source/PaxHeader/mod_bioinp.F
diff --git a/...ource/BIO_source/PaxHeader/mod_detritus.F → src/BIO_source/PaxHeader/mod_detritus.F b/...ource/BIO_source/PaxHeader/mod_detritus.F → src/BIO_source/PaxHeader/mod_detritus.F
diff --git a/...source/BIO_source/PaxHeader/mod_newinp2.F → src/BIO_source/PaxHeader/mod_newinp2.F b/...source/BIO_source/PaxHeader/mod_newinp2.F → src/BIO_source/PaxHeader/mod_newinp2.F
diff --git a/...ource/BIO_source/PaxHeader/mod_nutrient.F → src/BIO_source/PaxHeader/mod_nutrient.F b/...ource/BIO_source/PaxHeader/mod_nutrient.F → src/BIO_source/PaxHeader/mod_nutrient.F
diff --git a/.../BIO_source/PaxHeader/mod_phytoplankton.F → src/BIO_source/PaxHeader/mod_phytoplankton.F b/.../BIO_source/PaxHeader/mod_phytoplankton.F → src/BIO_source/PaxHeader/mod_phytoplankton.F
diff --git a/..._source/BIO_source/PaxHeader/mod_utils2.F → src/BIO_source/PaxHeader/mod_utils2.F b/..._source/BIO_source/PaxHeader/mod_utils2.F → src/BIO_source/PaxHeader/mod_utils2.F
diff --git a/...ce/BIO_source/PaxHeader/mod_zooplankton.F → src/BIO_source/PaxHeader/mod_zooplankton.F b/...ce/BIO_source/PaxHeader/mod_zooplankton.F → src/BIO_source/PaxHeader/mod_zooplankton.F
diff --git a/...OM_source/BIO_source/PaxHeader/nutrient.F → src/BIO_source/PaxHeader/nutrient.F b/...OM_source/BIO_source/PaxHeader/nutrient.F → src/BIO_source/PaxHeader/nutrient.F
diff --git a/...urce/BIO_source/PaxHeader/phytoplankton.F → src/BIO_source/PaxHeader/phytoplankton.F b/...urce/BIO_source/PaxHeader/phytoplankton.F → src/BIO_source/PaxHeader/phytoplankton.F
diff --git a/...source/BIO_source/PaxHeader/zooplankton.F → src/BIO_source/PaxHeader/zooplankton.F b/...source/BIO_source/PaxHeader/zooplankton.F → src/BIO_source/PaxHeader/zooplankton.F
diff --git a/src/FVCOM_source/BIO_source/bacteria.F → src/BIO_source/bacteria.F b/src/FVCOM_source/BIO_source/bacteria.F → src/BIO_source/bacteria.F
diff --git a/src/FVCOM_source/BIO_source/bio_mixing.F → src/BIO_source/bio_mixing.F b/src/FVCOM_source/BIO_source/bio_mixing.F → src/BIO_source/bio_mixing.F
diff --git a/src/FVCOM_source/BIO_source/bio_model.in → src/BIO_source/bio_model.in b/src/FVCOM_source/BIO_source/bio_model.in → src/BIO_source/bio_model.in
diff --git a/src/FVCOM_source/BIO_source/bio_model_new.in → src/BIO_source/bio_model_new.in b/src/FVCOM_source/BIO_source/bio_model_new.in → src/BIO_source/bio_model_new.in
diff --git a/src/FVCOM_source/BIO_source/detritus.F → src/BIO_source/detritus.F b/src/FVCOM_source/BIO_source/detritus.F → src/BIO_source/detritus.F
diff --git a/src/FVCOM_source/BIO_source/detritus_ini.F → src/BIO_source/detritus_ini.F b/src/FVCOM_source/BIO_source/detritus_ini.F → src/BIO_source/detritus_ini.F
diff --git a/src/FVCOM_source/BIO_source/get_parameter.F → src/BIO_source/get_parameter.F b/src/FVCOM_source/BIO_source/get_parameter.F → src/BIO_source/get_parameter.F
diff --git a/src/FVCOM_source/BIO_source/makefile → src/BIO_source/makefile b/src/FVCOM_source/BIO_source/makefile → src/BIO_source/makefile
diff --git a/src/FVCOM_source/BIO_source/mod_1D.F → src/BIO_source/mod_1D.F b/src/FVCOM_source/BIO_source/mod_1D.F → src/BIO_source/mod_1D.F
diff --git a/src/FVCOM_source/BIO_source/mod_DOM.F → src/BIO_source/mod_DOM.F b/src/FVCOM_source/BIO_source/mod_DOM.F → src/BIO_source/mod_DOM.F
diff --git a/src/FVCOM_source/BIO_source/mod_bacteria.F → src/BIO_source/mod_bacteria.F b/src/FVCOM_source/BIO_source/mod_bacteria.F → src/BIO_source/mod_bacteria.F
diff --git a/src/FVCOM_source/BIO_source/mod_bioinp.F → src/BIO_source/mod_bioinp.F b/src/FVCOM_source/BIO_source/mod_bioinp.F → src/BIO_source/mod_bioinp.F
diff --git a/src/FVCOM_source/BIO_source/mod_detritus.F → src/BIO_source/mod_detritus.F b/src/FVCOM_source/BIO_source/mod_detritus.F → src/BIO_source/mod_detritus.F
diff --git a/src/FVCOM_source/BIO_source/mod_newinp2.F → src/BIO_source/mod_newinp2.F b/src/FVCOM_source/BIO_source/mod_newinp2.F → src/BIO_source/mod_newinp2.F
diff --git a/src/FVCOM_source/BIO_source/mod_nutrient.F → src/BIO_source/mod_nutrient.F b/src/FVCOM_source/BIO_source/mod_nutrient.F → src/BIO_source/mod_nutrient.F
diff --git a/...COM_source/BIO_source/mod_phytoplankton.F → src/BIO_source/mod_phytoplankton.F b/...COM_source/BIO_source/mod_phytoplankton.F → src/BIO_source/mod_phytoplankton.F
diff --git a/src/FVCOM_source/BIO_source/mod_utils2.F → src/BIO_source/mod_utils2.F b/src/FVCOM_source/BIO_source/mod_utils2.F → src/BIO_source/mod_utils2.F
diff --git a/...FVCOM_source/BIO_source/mod_zooplankton.F → src/BIO_source/mod_zooplankton.F b/...FVCOM_source/BIO_source/mod_zooplankton.F → src/BIO_source/mod_zooplankton.F
diff --git a/src/FVCOM_source/BIO_source/nutrient.F → src/BIO_source/nutrient.F b/src/FVCOM_source/BIO_source/nutrient.F → src/BIO_source/nutrient.F
diff --git a/src/FVCOM_source/BIO_source/phytoplankton.F → src/BIO_source/phytoplankton.F b/src/FVCOM_source/BIO_source/phytoplankton.F → src/BIO_source/phytoplankton.F
diff --git a/src/FVCOM_source/BIO_source/zooplankton.F → src/BIO_source/zooplankton.F b/src/FVCOM_source/BIO_source/zooplankton.F → src/BIO_source/zooplankton.F
diff --git a/src/FVCOM_source/CVS/Entries → src/CVS/Entries b/src/FVCOM_source/CVS/Entries → src/CVS/Entries
diff --git a/src/FVCOM_source/CVS/PaxHeader/Entries → src/CVS/PaxHeader/Entries b/src/FVCOM_source/CVS/PaxHeader/Entries → src/CVS/PaxHeader/Entries
diff --git a/src/FVCOM_source/CVS/PaxHeader/Repository → src/CVS/PaxHeader/Repository b/src/FVCOM_source/CVS/PaxHeader/Repository → src/CVS/PaxHeader/Repository
diff --git a/src/FVCOM_source/CVS/PaxHeader/Root → src/CVS/PaxHeader/Root b/src/FVCOM_source/CVS/PaxHeader/Root → src/CVS/PaxHeader/Root
diff --git a/src/FVCOM_source/CVS/Repository → src/CVS/Repository b/src/FVCOM_source/CVS/Repository → src/CVS/Repository
diff --git a/src/FVCOM_source/CVS/Root → src/CVS/Root b/src/FVCOM_source/CVS/Root → src/CVS/Root
diff --git a/src/FVCOM_source/PaxHeader/BIO_source → src/PaxHeader/BIO_source b/src/FVCOM_source/PaxHeader/BIO_source → src/PaxHeader/BIO_source
diff --git a/src/FVCOM_source/PaxHeader/CVS → src/PaxHeader/CVS b/src/FVCOM_source/PaxHeader/CVS → src/PaxHeader/CVS
diff --git a/src/FVCOM_source/PaxHeader/RELEASE_NOTES → src/PaxHeader/RELEASE_NOTES b/src/FVCOM_source/PaxHeader/RELEASE_NOTES → src/PaxHeader/RELEASE_NOTES
diff --git a/src/FVCOM_source/PaxHeader/adcor.F → src/PaxHeader/adcor.F b/src/FVCOM_source/PaxHeader/adcor.F → src/PaxHeader/adcor.F
diff --git a/src/FVCOM_source/PaxHeader/adjust2d3d.F → src/PaxHeader/adjust2d3d.F b/src/FVCOM_source/PaxHeader/adjust2d3d.F → src/PaxHeader/adjust2d3d.F
diff --git a/src/FVCOM_source/PaxHeader/adjust_ts.F → src/PaxHeader/adjust_ts.F b/src/FVCOM_source/PaxHeader/adjust_ts.F → src/PaxHeader/adjust_ts.F
diff --git a/src/FVCOM_source/PaxHeader/adv_q.F → src/PaxHeader/adv_q.F b/src/FVCOM_source/PaxHeader/adv_q.F → src/PaxHeader/adv_q.F
diff --git a/src/FVCOM_source/PaxHeader/adv_s.F → src/PaxHeader/adv_s.F b/src/FVCOM_source/PaxHeader/adv_s.F → src/PaxHeader/adv_s.F
diff --git a/src/FVCOM_source/PaxHeader/adv_t.F → src/PaxHeader/adv_t.F b/src/FVCOM_source/PaxHeader/adv_t.F → src/PaxHeader/adv_t.F
diff --git a/src/FVCOM_source/PaxHeader/adv_uv_edge_gcn.F → src/PaxHeader/adv_uv_edge_gcn.F b/src/FVCOM_source/PaxHeader/adv_uv_edge_gcn.F → src/PaxHeader/adv_uv_edge_gcn.F
diff --git a/src/FVCOM_source/PaxHeader/adv_uv_edge_gcy.F → src/PaxHeader/adv_uv_edge_gcy.F b/src/FVCOM_source/PaxHeader/adv_uv_edge_gcy.F → src/PaxHeader/adv_uv_edge_gcy.F
diff --git a/src/FVCOM_source/PaxHeader/advave_edge_gcn.F → src/PaxHeader/advave_edge_gcn.F b/src/FVCOM_source/PaxHeader/advave_edge_gcn.F → src/PaxHeader/advave_edge_gcn.F
diff --git a/src/FVCOM_source/PaxHeader/advave_edge_gcy.F → src/PaxHeader/advave_edge_gcy.F b/src/FVCOM_source/PaxHeader/advave_edge_gcy.F → src/PaxHeader/advave_edge_gcy.F
diff --git a/...COM_source/PaxHeader/advection_edge_gcn.F → src/PaxHeader/advection_edge_gcn.F b/...COM_source/PaxHeader/advection_edge_gcn.F → src/PaxHeader/advection_edge_gcn.F
diff --git a/...COM_source/PaxHeader/advection_edge_gcy.F → src/PaxHeader/advection_edge_gcy.F b/...COM_source/PaxHeader/advection_edge_gcy.F → src/PaxHeader/advection_edge_gcy.F
diff --git a/src/FVCOM_source/PaxHeader/allocate_all.F → src/PaxHeader/allocate_all.F b/src/FVCOM_source/PaxHeader/allocate_all.F → src/PaxHeader/allocate_all.F
diff --git a/src/FVCOM_source/PaxHeader/baropg.F → src/PaxHeader/baropg.F b/src/FVCOM_source/PaxHeader/baropg.F → src/PaxHeader/baropg.F
diff --git a/src/FVCOM_source/PaxHeader/bcond_gcn.F → src/PaxHeader/bcond_gcn.F b/src/FVCOM_source/PaxHeader/bcond_gcn.F → src/PaxHeader/bcond_gcn.F
diff --git a/src/FVCOM_source/PaxHeader/bcond_gcy.F → src/PaxHeader/bcond_gcy.F b/src/FVCOM_source/PaxHeader/bcond_gcy.F → src/PaxHeader/bcond_gcy.F
diff --git a/src/FVCOM_source/PaxHeader/bcond_ts.F → src/PaxHeader/bcond_ts.F b/src/FVCOM_source/PaxHeader/bcond_ts.F → src/PaxHeader/bcond_ts.F
diff --git a/src/FVCOM_source/PaxHeader/bio_model.in → src/PaxHeader/bio_model.in b/src/FVCOM_source/PaxHeader/bio_model.in → src/PaxHeader/bio_model.in
diff --git a/src/FVCOM_source/PaxHeader/brough.F → src/PaxHeader/brough.F b/src/FVCOM_source/PaxHeader/brough.F → src/PaxHeader/brough.F
diff --git a/src/FVCOM_source/PaxHeader/calc_vort.F → src/PaxHeader/calc_vort.F b/src/FVCOM_source/PaxHeader/calc_vort.F → src/PaxHeader/calc_vort.F
diff --git a/src/FVCOM_source/PaxHeader/cell_area.F → src/PaxHeader/cell_area.F b/src/FVCOM_source/PaxHeader/cell_area.F → src/PaxHeader/cell_area.F
diff --git a/src/FVCOM_source/PaxHeader/cntrl_prmtrs.F → src/PaxHeader/cntrl_prmtrs.F b/src/FVCOM_source/PaxHeader/cntrl_prmtrs.F → src/PaxHeader/cntrl_prmtrs.F
diff --git a/src/FVCOM_source/PaxHeader/coare26z.F → src/PaxHeader/coare26z.F b/src/FVCOM_source/PaxHeader/coare26z.F → src/PaxHeader/coare26z.F
diff --git a/src/FVCOM_source/PaxHeader/coare40vn.F → src/PaxHeader/coare40vn.F b/src/FVCOM_source/PaxHeader/coare40vn.F → src/PaxHeader/coare40vn.F
diff --git a/src/FVCOM_source/PaxHeader/conv_over.F → src/PaxHeader/conv_over.F b/src/FVCOM_source/PaxHeader/conv_over.F → src/PaxHeader/conv_over.F
diff --git a/src/FVCOM_source/PaxHeader/coords_n_const.F → src/PaxHeader/coords_n_const.F b/src/FVCOM_source/PaxHeader/coords_n_const.F → src/PaxHeader/coords_n_const.F
diff --git a/src/FVCOM_source/PaxHeader/depth_check.F → src/PaxHeader/depth_check.F b/src/FVCOM_source/PaxHeader/depth_check.F → src/PaxHeader/depth_check.F
diff --git a/src/FVCOM_source/PaxHeader/depth_grad.F → src/PaxHeader/depth_grad.F b/src/FVCOM_source/PaxHeader/depth_grad.F → src/PaxHeader/depth_grad.F
diff --git a/src/FVCOM_source/PaxHeader/edge_len.F → src/PaxHeader/edge_len.F b/src/FVCOM_source/PaxHeader/edge_len.F → src/PaxHeader/edge_len.F
diff --git a/src/FVCOM_source/PaxHeader/enkf_ncdio.F → src/PaxHeader/enkf_ncdio.F b/src/FVCOM_source/PaxHeader/enkf_ncdio.F → src/PaxHeader/enkf_ncdio.F
diff --git a/src/FVCOM_source/PaxHeader/eqs_of_state.F → src/PaxHeader/eqs_of_state.F b/src/FVCOM_source/PaxHeader/eqs_of_state.F → src/PaxHeader/eqs_of_state.F
diff --git a/src/FVCOM_source/PaxHeader/extel_edge.F → src/PaxHeader/extel_edge.F b/src/FVCOM_source/PaxHeader/extel_edge.F → src/PaxHeader/extel_edge.F
diff --git a/src/FVCOM_source/PaxHeader/extelpf_edge.F → src/PaxHeader/extelpf_edge.F b/src/FVCOM_source/PaxHeader/extelpf_edge.F → src/PaxHeader/extelpf_edge.F
diff --git a/src/FVCOM_source/PaxHeader/external_step.F → src/PaxHeader/external_step.F b/src/FVCOM_source/PaxHeader/external_step.F → src/PaxHeader/external_step.F
diff --git a/src/FVCOM_source/PaxHeader/extuv_edge.F → src/PaxHeader/extuv_edge.F b/src/FVCOM_source/PaxHeader/extuv_edge.F → src/PaxHeader/extuv_edge.F
diff --git a/src/FVCOM_source/PaxHeader/fct_q2.F → src/PaxHeader/fct_q2.F b/src/FVCOM_source/PaxHeader/fct_q2.F → src/PaxHeader/fct_q2.F
diff --git a/src/FVCOM_source/PaxHeader/fct_q2l.F → src/PaxHeader/fct_q2l.F b/src/FVCOM_source/PaxHeader/fct_q2l.F → src/PaxHeader/fct_q2l.F
diff --git a/src/FVCOM_source/PaxHeader/fct_s.F → src/PaxHeader/fct_s.F b/src/FVCOM_source/PaxHeader/fct_s.F → src/PaxHeader/fct_s.F
diff --git a/src/FVCOM_source/PaxHeader/fct_t.F → src/PaxHeader/fct_t.F b/src/FVCOM_source/PaxHeader/fct_t.F → src/PaxHeader/fct_t.F
diff --git a/src/FVCOM_source/PaxHeader/func_pointer.c → src/PaxHeader/func_pointer.c b/src/FVCOM_source/PaxHeader/func_pointer.c → src/PaxHeader/func_pointer.c
diff --git a/src/FVCOM_source/PaxHeader/fvcom.F → src/PaxHeader/fvcom.F b/src/FVCOM_source/PaxHeader/fvcom.F → src/PaxHeader/fvcom.F
diff --git a/src/FVCOM_source/PaxHeader/genmap.F → src/PaxHeader/genmap.F b/src/FVCOM_source/PaxHeader/genmap.F → src/PaxHeader/genmap.F
diff --git a/src/FVCOM_source/PaxHeader/genmap_lsf.F → src/PaxHeader/genmap_lsf.F b/src/FVCOM_source/PaxHeader/genmap_lsf.F → src/PaxHeader/genmap_lsf.F
diff --git a/src/FVCOM_source/PaxHeader/genmap_obc.F → src/PaxHeader/genmap_obc.F b/src/FVCOM_source/PaxHeader/genmap_obc.F → src/PaxHeader/genmap_obc.F
diff --git a/src/FVCOM_source/PaxHeader/ghostuv.F → src/PaxHeader/ghostuv.F b/src/FVCOM_source/PaxHeader/ghostuv.F → src/PaxHeader/ghostuv.F
diff --git a/src/FVCOM_source/PaxHeader/grid_metrics.F → src/PaxHeader/grid_metrics.F b/src/FVCOM_source/PaxHeader/grid_metrics.F → src/PaxHeader/grid_metrics.F
diff --git a/src/FVCOM_source/PaxHeader/ice_albedo.F → src/PaxHeader/ice_albedo.F b/src/FVCOM_source/PaxHeader/ice_albedo.F → src/PaxHeader/ice_albedo.F
diff --git a/src/FVCOM_source/PaxHeader/ice_atmo.F → src/PaxHeader/ice_atmo.F b/src/FVCOM_source/PaxHeader/ice_atmo.F → src/PaxHeader/ice_atmo.F
diff --git a/src/FVCOM_source/PaxHeader/ice_calendar.F → src/PaxHeader/ice_calendar.F b/src/FVCOM_source/PaxHeader/ice_calendar.F → src/PaxHeader/ice_calendar.F
diff --git a/src/FVCOM_source/PaxHeader/ice_constants.F → src/PaxHeader/ice_constants.F b/src/FVCOM_source/PaxHeader/ice_constants.F → src/PaxHeader/ice_constants.F
diff --git a/src/FVCOM_source/PaxHeader/ice_coupling.F → src/PaxHeader/ice_coupling.F b/src/FVCOM_source/PaxHeader/ice_coupling.F → src/PaxHeader/ice_coupling.F
diff --git a/src/FVCOM_source/PaxHeader/ice_domain.F → src/PaxHeader/ice_domain.F b/src/FVCOM_source/PaxHeader/ice_domain.F → src/PaxHeader/ice_domain.F
diff --git a/src/FVCOM_source/PaxHeader/ice_fileunits.F → src/PaxHeader/ice_fileunits.F b/src/FVCOM_source/PaxHeader/ice_fileunits.F → src/PaxHeader/ice_fileunits.F
diff --git a/src/FVCOM_source/PaxHeader/ice_flux.F → src/PaxHeader/ice_flux.F b/src/FVCOM_source/PaxHeader/ice_flux.F → src/PaxHeader/ice_flux.F
diff --git a/src/FVCOM_source/PaxHeader/ice_flux_in.F → src/PaxHeader/ice_flux_in.F b/src/FVCOM_source/PaxHeader/ice_flux_in.F → src/PaxHeader/ice_flux_in.F
diff --git a/src/FVCOM_source/PaxHeader/ice_grid.F → src/PaxHeader/ice_grid.F b/src/FVCOM_source/PaxHeader/ice_grid.F → src/PaxHeader/ice_grid.F
diff --git a/src/FVCOM_source/PaxHeader/ice_init.F → src/PaxHeader/ice_init.F b/src/FVCOM_source/PaxHeader/ice_init.F → src/PaxHeader/ice_init.F
diff --git a/src/FVCOM_source/PaxHeader/ice_itd.F → src/PaxHeader/ice_itd.F b/src/FVCOM_source/PaxHeader/ice_itd.F → src/PaxHeader/ice_itd.F
diff --git a/src/FVCOM_source/PaxHeader/ice_itd_linear.F → src/PaxHeader/ice_itd_linear.F b/src/FVCOM_source/PaxHeader/ice_itd_linear.F → src/PaxHeader/ice_itd_linear.F
diff --git a/src/FVCOM_source/PaxHeader/ice_kinds_mod.F → src/PaxHeader/ice_kinds_mod.F b/src/FVCOM_source/PaxHeader/ice_kinds_mod.F → src/PaxHeader/ice_kinds_mod.F
diff --git a/src/FVCOM_source/PaxHeader/ice_mechred.F → src/PaxHeader/ice_mechred.F b/src/FVCOM_source/PaxHeader/ice_mechred.F → src/PaxHeader/ice_mechred.F
diff --git a/src/FVCOM_source/PaxHeader/ice_model_size.F → src/PaxHeader/ice_model_size.F b/src/FVCOM_source/PaxHeader/ice_model_size.F → src/PaxHeader/ice_model_size.F
diff --git a/src/FVCOM_source/PaxHeader/ice_ocean.F → src/PaxHeader/ice_ocean.F b/src/FVCOM_source/PaxHeader/ice_ocean.F → src/PaxHeader/ice_ocean.F
diff --git a/src/FVCOM_source/PaxHeader/ice_scaling.F → src/PaxHeader/ice_scaling.F b/src/FVCOM_source/PaxHeader/ice_scaling.F → src/PaxHeader/ice_scaling.F
diff --git a/src/FVCOM_source/PaxHeader/ice_state.F → src/PaxHeader/ice_state.F b/src/FVCOM_source/PaxHeader/ice_state.F → src/PaxHeader/ice_state.F
diff --git a/src/FVCOM_source/PaxHeader/ice_therm_itd.F → src/PaxHeader/ice_therm_itd.F b/src/FVCOM_source/PaxHeader/ice_therm_itd.F → src/PaxHeader/ice_therm_itd.F
diff --git a/...COM_source/PaxHeader/ice_therm_vertical.F → src/PaxHeader/ice_therm_vertical.F b/...COM_source/PaxHeader/ice_therm_vertical.F → src/PaxHeader/ice_therm_vertical.F
diff --git a/src/FVCOM_source/PaxHeader/ice_work.F → src/PaxHeader/ice_work.F b/src/FVCOM_source/PaxHeader/ice_work.F → src/PaxHeader/ice_work.F
diff --git a/src/FVCOM_source/PaxHeader/icing.F → src/PaxHeader/icing.F b/src/FVCOM_source/PaxHeader/icing.F → src/PaxHeader/icing.F
diff --git a/src/FVCOM_source/PaxHeader/init_sed.F → src/PaxHeader/init_sed.F b/src/FVCOM_source/PaxHeader/init_sed.F → src/PaxHeader/init_sed.F
diff --git a/src/FVCOM_source/PaxHeader/input → src/PaxHeader/input b/src/FVCOM_source/PaxHeader/input → src/PaxHeader/input
diff --git a/src/FVCOM_source/PaxHeader/internal_step.F → src/PaxHeader/internal_step.F b/src/FVCOM_source/PaxHeader/internal_step.F → src/PaxHeader/internal_step.F
diff --git a/src/FVCOM_source/PaxHeader/libs → src/PaxHeader/libs b/src/FVCOM_source/PaxHeader/libs → src/PaxHeader/libs
diff --git a/src/FVCOM_source/PaxHeader/linklist.F → src/PaxHeader/linklist.F b/src/FVCOM_source/PaxHeader/linklist.F → src/PaxHeader/linklist.F
diff --git a/src/FVCOM_source/PaxHeader/load_grid.F → src/PaxHeader/load_grid.F b/src/FVCOM_source/PaxHeader/load_grid.F → src/PaxHeader/load_grid.F
diff --git a/src/FVCOM_source/PaxHeader/longshore_flow.F → src/PaxHeader/longshore_flow.F b/src/FVCOM_source/PaxHeader/longshore_flow.F → src/PaxHeader/longshore_flow.F
diff --git a/src/FVCOM_source/PaxHeader/make.inc_example → src/PaxHeader/make.inc_example b/src/FVCOM_source/PaxHeader/make.inc_example → src/PaxHeader/make.inc_example
diff --git a/src/FVCOM_source/PaxHeader/makedepends → src/PaxHeader/makedepends b/src/FVCOM_source/PaxHeader/makedepends → src/PaxHeader/makedepends
diff --git a/src/FVCOM_source/PaxHeader/makefile → src/PaxHeader/makefile b/src/FVCOM_source/PaxHeader/makefile → src/PaxHeader/makefile
diff --git a/src/FVCOM_source/PaxHeader/mod_action_ex.F → src/PaxHeader/mod_action_ex.F b/src/FVCOM_source/PaxHeader/mod_action_ex.F → src/PaxHeader/mod_action_ex.F
diff --git a/src/FVCOM_source/PaxHeader/mod_action_im.F → src/PaxHeader/mod_action_im.F b/src/FVCOM_source/PaxHeader/mod_action_im.F → src/PaxHeader/mod_action_im.F
diff --git a/src/FVCOM_source/PaxHeader/mod_assim.F → src/PaxHeader/mod_assim.F b/src/FVCOM_source/PaxHeader/mod_assim.F → src/PaxHeader/mod_assim.F
diff --git a/src/FVCOM_source/PaxHeader/mod_balance_2d.F → src/PaxHeader/mod_balance_2d.F b/src/FVCOM_source/PaxHeader/mod_balance_2d.F → src/PaxHeader/mod_balance_2d.F
diff --git a/src/FVCOM_source/PaxHeader/mod_bbl.F → src/PaxHeader/mod_bbl.F b/src/FVCOM_source/PaxHeader/mod_bbl.F → src/PaxHeader/mod_bbl.F
diff --git a/src/FVCOM_source/PaxHeader/mod_bio_3D.F → src/PaxHeader/mod_bio_3D.F b/src/FVCOM_source/PaxHeader/mod_bio_3D.F → src/PaxHeader/mod_bio_3D.F
diff --git a/src/FVCOM_source/PaxHeader/mod_boundschk.F → src/PaxHeader/mod_boundschk.F b/src/FVCOM_source/PaxHeader/mod_boundschk.F → src/PaxHeader/mod_boundschk.F
diff --git a/src/FVCOM_source/PaxHeader/mod_bulk.F → src/PaxHeader/mod_bulk.F b/src/FVCOM_source/PaxHeader/mod_bulk.F → src/PaxHeader/mod_bulk.F
diff --git a/src/FVCOM_source/PaxHeader/mod_clock.F → src/PaxHeader/mod_clock.F b/src/FVCOM_source/PaxHeader/mod_clock.F → src/PaxHeader/mod_clock.F
diff --git a/src/FVCOM_source/PaxHeader/mod_cstms_vars.F → src/PaxHeader/mod_cstms_vars.F b/src/FVCOM_source/PaxHeader/mod_cstms_vars.F → src/PaxHeader/mod_cstms_vars.F
diff --git a/src/FVCOM_source/PaxHeader/mod_dam.F → src/PaxHeader/mod_dam.F b/src/FVCOM_source/PaxHeader/mod_dam.F → src/PaxHeader/mod_dam.F
diff --git a/src/FVCOM_source/PaxHeader/mod_dye.F → src/PaxHeader/mod_dye.F b/src/FVCOM_source/PaxHeader/mod_dye.F → src/PaxHeader/mod_dye.F
diff --git a/src/FVCOM_source/PaxHeader/mod_enkf.F → src/PaxHeader/mod_enkf.F b/src/FVCOM_source/PaxHeader/mod_enkf.F → src/PaxHeader/mod_enkf.F
diff --git a/src/FVCOM_source/PaxHeader/mod_enkf_ncd.F → src/PaxHeader/mod_enkf_ncd.F b/src/FVCOM_source/PaxHeader/mod_enkf_ncd.F → src/PaxHeader/mod_enkf_ncd.F
diff --git a/src/FVCOM_source/PaxHeader/mod_enkf_obs.F → src/PaxHeader/mod_enkf_obs.F b/src/FVCOM_source/PaxHeader/mod_enkf_obs.F → src/PaxHeader/mod_enkf_obs.F
diff --git a/src/FVCOM_source/PaxHeader/mod_enkfassim.F → src/PaxHeader/mod_enkfassim.F b/src/FVCOM_source/PaxHeader/mod_enkfassim.F → src/PaxHeader/mod_enkfassim.F
diff --git a/...FVCOM_source/PaxHeader/mod_esmf_nesting.F → src/PaxHeader/mod_esmf_nesting.F b/...FVCOM_source/PaxHeader/mod_esmf_nesting.F → src/PaxHeader/mod_esmf_nesting.F
diff --git a/src/FVCOM_source/PaxHeader/mod_etkf.F → src/PaxHeader/mod_etkf.F b/src/FVCOM_source/PaxHeader/mod_etkf.F → src/PaxHeader/mod_etkf.F
diff --git a/src/FVCOM_source/PaxHeader/mod_flocmod.F → src/PaxHeader/mod_flocmod.F b/src/FVCOM_source/PaxHeader/mod_flocmod.F → src/PaxHeader/mod_flocmod.F
diff --git a/src/FVCOM_source/PaxHeader/mod_fluid_mud.F → src/PaxHeader/mod_fluid_mud.F b/src/FVCOM_source/PaxHeader/mod_fluid_mud.F → src/PaxHeader/mod_fluid_mud.F
diff --git a/src/FVCOM_source/PaxHeader/mod_force.F → src/PaxHeader/mod_force.F b/src/FVCOM_source/PaxHeader/mod_force.F → src/PaxHeader/mod_force.F
diff --git a/src/FVCOM_source/PaxHeader/mod_gotm.F → src/PaxHeader/mod_gotm.F b/src/FVCOM_source/PaxHeader/mod_gotm.F → src/PaxHeader/mod_gotm.F
diff --git a/src/FVCOM_source/PaxHeader/mod_heatflux.F → src/PaxHeader/mod_heatflux.F b/src/FVCOM_source/PaxHeader/mod_heatflux.F → src/PaxHeader/mod_heatflux.F
diff --git a/src/FVCOM_source/PaxHeader/mod_ice.F → src/PaxHeader/mod_ice.F b/src/FVCOM_source/PaxHeader/mod_ice.F → src/PaxHeader/mod_ice.F
diff --git a/src/FVCOM_source/PaxHeader/mod_ice2d.F → src/PaxHeader/mod_ice2d.F b/src/FVCOM_source/PaxHeader/mod_ice2d.F → src/PaxHeader/mod_ice2d.F
diff --git a/src/FVCOM_source/PaxHeader/mod_input.F → src/PaxHeader/mod_input.F b/src/FVCOM_source/PaxHeader/mod_input.F → src/PaxHeader/mod_input.F
diff --git a/src/FVCOM_source/PaxHeader/mod_interp.F → src/PaxHeader/mod_interp.F b/src/FVCOM_source/PaxHeader/mod_interp.F → src/PaxHeader/mod_interp.F
diff --git a/src/FVCOM_source/PaxHeader/mod_lag.F → src/PaxHeader/mod_lag.F b/src/FVCOM_source/PaxHeader/mod_lag.F → src/PaxHeader/mod_lag.F
diff --git a/src/FVCOM_source/PaxHeader/mod_main.F → src/PaxHeader/mod_main.F b/src/FVCOM_source/PaxHeader/mod_main.F → src/PaxHeader/mod_main.F
diff --git a/src/FVCOM_source/PaxHeader/mod_main_wave.F → src/PaxHeader/mod_main_wave.F b/src/FVCOM_source/PaxHeader/mod_main_wave.F → src/PaxHeader/mod_main_wave.F
diff --git a/src/FVCOM_source/PaxHeader/mod_meanflow.F → src/PaxHeader/mod_meanflow.F b/src/FVCOM_source/PaxHeader/mod_meanflow.F → src/PaxHeader/mod_meanflow.F
diff --git a/src/FVCOM_source/PaxHeader/mod_ncdio.F → src/PaxHeader/mod_ncdio.F b/src/FVCOM_source/PaxHeader/mod_ncdio.F → src/PaxHeader/mod_ncdio.F
diff --git a/src/FVCOM_source/PaxHeader/mod_ncll.F → src/PaxHeader/mod_ncll.F b/src/FVCOM_source/PaxHeader/mod_ncll.F → src/PaxHeader/mod_ncll.F
diff --git a/src/FVCOM_source/PaxHeader/mod_nctools.F → src/PaxHeader/mod_nctools.F b/src/FVCOM_source/PaxHeader/mod_nctools.F → src/PaxHeader/mod_nctools.F
diff --git a/src/FVCOM_source/PaxHeader/mod_nesting.F → src/PaxHeader/mod_nesting.F b/src/FVCOM_source/PaxHeader/mod_nesting.F → src/PaxHeader/mod_nesting.F
diff --git a/src/FVCOM_source/PaxHeader/mod_newinp.F → src/PaxHeader/mod_newinp.F b/src/FVCOM_source/PaxHeader/mod_newinp.F → src/PaxHeader/mod_newinp.F
diff --git a/src/FVCOM_source/PaxHeader/mod_non_hydro.F → src/PaxHeader/mod_non_hydro.F b/src/FVCOM_source/PaxHeader/mod_non_hydro.F → src/PaxHeader/mod_non_hydro.F
diff --git a/src/FVCOM_source/PaxHeader/mod_northpole.F → src/PaxHeader/mod_northpole.F b/src/FVCOM_source/PaxHeader/mod_northpole.F → src/PaxHeader/mod_northpole.F
diff --git a/src/FVCOM_source/PaxHeader/mod_obcs.F → src/PaxHeader/mod_obcs.F b/src/FVCOM_source/PaxHeader/mod_obcs.F → src/PaxHeader/mod_obcs.F
diff --git a/src/FVCOM_source/PaxHeader/mod_obcs2.F → src/PaxHeader/mod_obcs2.F b/src/FVCOM_source/PaxHeader/mod_obcs2.F → src/PaxHeader/mod_obcs2.F
diff --git a/src/FVCOM_source/PaxHeader/mod_obcs3.F → src/PaxHeader/mod_obcs3.F b/src/FVCOM_source/PaxHeader/mod_obcs3.F → src/PaxHeader/mod_obcs3.F
diff --git a/src/FVCOM_source/PaxHeader/mod_onedtide.F → src/PaxHeader/mod_onedtide.F b/src/FVCOM_source/PaxHeader/mod_onedtide.F → src/PaxHeader/mod_onedtide.F
diff --git a/...rce/PaxHeader/mod_optimal_interpolation.F → src/PaxHeader/mod_optimal_interpolation.F b/...rce/PaxHeader/mod_optimal_interpolation.F → src/PaxHeader/mod_optimal_interpolation.F
diff --git a/src/FVCOM_source/PaxHeader/mod_par.F → src/PaxHeader/mod_par.F b/src/FVCOM_source/PaxHeader/mod_par.F → src/PaxHeader/mod_par.F
diff --git a/src/FVCOM_source/PaxHeader/mod_par_special.F → src/PaxHeader/mod_par_special.F b/src/FVCOM_source/PaxHeader/mod_par_special.F → src/PaxHeader/mod_par_special.F
diff --git a/src/FVCOM_source/PaxHeader/mod_petsc.F → src/PaxHeader/mod_petsc.F b/src/FVCOM_source/PaxHeader/mod_petsc.F → src/PaxHeader/mod_petsc.F
diff --git a/src/FVCOM_source/PaxHeader/mod_plbc.F → src/PaxHeader/mod_plbc.F b/src/FVCOM_source/PaxHeader/mod_plbc.F → src/PaxHeader/mod_plbc.F
diff --git a/src/FVCOM_source/PaxHeader/mod_prec.F → src/PaxHeader/mod_prec.F b/src/FVCOM_source/PaxHeader/mod_prec.F → src/PaxHeader/mod_prec.F
diff --git a/src/FVCOM_source/PaxHeader/mod_probe.F → src/PaxHeader/mod_probe.F b/src/FVCOM_source/PaxHeader/mod_probe.F → src/PaxHeader/mod_probe.F
diff --git a/src/FVCOM_source/PaxHeader/mod_pwp.F → src/PaxHeader/mod_pwp.F b/src/FVCOM_source/PaxHeader/mod_pwp.F → src/PaxHeader/mod_pwp.F
diff --git a/src/FVCOM_source/PaxHeader/mod_report.F → src/PaxHeader/mod_report.F b/src/FVCOM_source/PaxHeader/mod_report.F → src/PaxHeader/mod_report.F
diff --git a/src/FVCOM_source/PaxHeader/mod_rrk.F → src/PaxHeader/mod_rrk.F b/src/FVCOM_source/PaxHeader/mod_rrk.F → src/PaxHeader/mod_rrk.F
diff --git a/src/FVCOM_source/PaxHeader/mod_rrkassim.F → src/PaxHeader/mod_rrkassim.F b/src/FVCOM_source/PaxHeader/mod_rrkassim.F → src/PaxHeader/mod_rrkassim.F
diff --git a/src/FVCOM_source/PaxHeader/mod_rrkf_obs.F → src/PaxHeader/mod_rrkf_obs.F b/src/FVCOM_source/PaxHeader/mod_rrkf_obs.F → src/PaxHeader/mod_rrkf_obs.F
diff --git a/src/FVCOM_source/PaxHeader/mod_scal.F → src/PaxHeader/mod_scal.F b/src/FVCOM_source/PaxHeader/mod_scal.F → src/PaxHeader/mod_scal.F
diff --git a/src/FVCOM_source/PaxHeader/mod_sed.F → src/PaxHeader/mod_sed.F b/src/FVCOM_source/PaxHeader/mod_sed.F → src/PaxHeader/mod_sed.F
diff --git a/src/FVCOM_source/PaxHeader/mod_sed_cstms.F → src/PaxHeader/mod_sed_cstms.F b/src/FVCOM_source/PaxHeader/mod_sed_cstms.F → src/PaxHeader/mod_sed_cstms.F
diff --git a/...VCOM_source/PaxHeader/mod_semi_implicit.F → src/PaxHeader/mod_semi_implicit.F b/...VCOM_source/PaxHeader/mod_semi_implicit.F → src/PaxHeader/mod_semi_implicit.F
diff --git a/src/FVCOM_source/PaxHeader/mod_set_time.F → src/PaxHeader/mod_set_time.F b/src/FVCOM_source/PaxHeader/mod_set_time.F → src/PaxHeader/mod_set_time.F
diff --git a/src/FVCOM_source/PaxHeader/mod_setup.F → src/PaxHeader/mod_setup.F b/src/FVCOM_source/PaxHeader/mod_setup.F → src/PaxHeader/mod_setup.F
diff --git a/src/FVCOM_source/PaxHeader/mod_sng.F → src/PaxHeader/mod_sng.F b/src/FVCOM_source/PaxHeader/mod_sng.F → src/PaxHeader/mod_sng.F
diff --git a/src/FVCOM_source/PaxHeader/mod_solar.F → src/PaxHeader/mod_solar.F b/src/FVCOM_source/PaxHeader/mod_solar.F → src/PaxHeader/mod_solar.F
diff --git a/..._source/PaxHeader/mod_sparse_timeseries.F → src/PaxHeader/mod_sparse_timeseries.F b/..._source/PaxHeader/mod_sparse_timeseries.F → src/PaxHeader/mod_sparse_timeseries.F
diff --git a/src/FVCOM_source/PaxHeader/mod_spherical.F → src/PaxHeader/mod_spherical.F b/src/FVCOM_source/PaxHeader/mod_spherical.F → src/PaxHeader/mod_spherical.F
diff --git a/src/FVCOM_source/PaxHeader/mod_startup.F → src/PaxHeader/mod_startup.F b/src/FVCOM_source/PaxHeader/mod_startup.F → src/PaxHeader/mod_startup.F
diff --git a/...source/PaxHeader/mod_station_timeseries.F → src/PaxHeader/mod_station_timeseries.F b/...source/PaxHeader/mod_station_timeseries.F → src/PaxHeader/mod_station_timeseries.F
diff --git a/src/FVCOM_source/PaxHeader/mod_time.F → src/PaxHeader/mod_time.F b/src/FVCOM_source/PaxHeader/mod_time.F → src/PaxHeader/mod_time.F
diff --git a/src/FVCOM_source/PaxHeader/mod_tridiag.F → src/PaxHeader/mod_tridiag.F b/src/FVCOM_source/PaxHeader/mod_tridiag.F → src/PaxHeader/mod_tridiag.F
diff --git a/src/FVCOM_source/PaxHeader/mod_types.F → src/PaxHeader/mod_types.F b/src/FVCOM_source/PaxHeader/mod_types.F → src/PaxHeader/mod_types.F
diff --git a/src/FVCOM_source/PaxHeader/mod_utils.F → src/PaxHeader/mod_utils.F b/src/FVCOM_source/PaxHeader/mod_utils.F → src/PaxHeader/mod_utils.F
diff --git a/src/FVCOM_source/PaxHeader/mod_visit.F → src/PaxHeader/mod_visit.F b/src/FVCOM_source/PaxHeader/mod_visit.F → src/PaxHeader/mod_visit.F
diff --git a/.../PaxHeader/mod_wave_current_interaction.F → src/PaxHeader/mod_wave_current_interaction.F b/.../PaxHeader/mod_wave_current_interaction.F → src/PaxHeader/mod_wave_current_interaction.F
diff --git a/src/FVCOM_source/PaxHeader/mod_wavesetup.F → src/PaxHeader/mod_wavesetup.F b/src/FVCOM_source/PaxHeader/mod_wavesetup.F → src/PaxHeader/mod_wavesetup.F
diff --git a/src/FVCOM_source/PaxHeader/mod_wd.F → src/PaxHeader/mod_wd.F b/src/FVCOM_source/PaxHeader/mod_wd.F → src/PaxHeader/mod_wd.F
diff --git a/src/FVCOM_source/PaxHeader/mod_wqm.F → src/PaxHeader/mod_wqm.F b/src/FVCOM_source/PaxHeader/mod_wqm.F → src/PaxHeader/mod_wqm.F
diff --git a/src/FVCOM_source/PaxHeader/namelist.F → src/PaxHeader/namelist.F b/src/FVCOM_source/PaxHeader/namelist.F → src/PaxHeader/namelist.F
diff --git a/src/FVCOM_source/PaxHeader/nh_set_nesting.F → src/PaxHeader/nh_set_nesting.F b/src/FVCOM_source/PaxHeader/nh_set_nesting.F → src/PaxHeader/nh_set_nesting.F
diff --git a/src/FVCOM_source/PaxHeader/ocpcre.F → src/PaxHeader/ocpcre.F b/src/FVCOM_source/PaxHeader/ocpcre.F → src/PaxHeader/ocpcre.F
diff --git a/src/FVCOM_source/PaxHeader/ocpids.F → src/PaxHeader/ocpids.F b/src/FVCOM_source/PaxHeader/ocpids.F → src/PaxHeader/ocpids.F
diff --git a/src/FVCOM_source/PaxHeader/ocpmix.F → src/PaxHeader/ocpmix.F b/src/FVCOM_source/PaxHeader/ocpmix.F → src/PaxHeader/ocpmix.F
diff --git a/src/FVCOM_source/PaxHeader/open_all.F → src/PaxHeader/open_all.F b/src/FVCOM_source/PaxHeader/open_all.F → src/PaxHeader/open_all.F
diff --git a/src/FVCOM_source/PaxHeader/particle.F → src/PaxHeader/particle.F b/src/FVCOM_source/PaxHeader/particle.F → src/PaxHeader/particle.F
diff --git a/src/FVCOM_source/PaxHeader/phy_baropg.F → src/PaxHeader/phy_baropg.F b/src/FVCOM_source/PaxHeader/phy_baropg.F → src/PaxHeader/phy_baropg.F
diff --git a/src/FVCOM_source/PaxHeader/print_vals.F → src/PaxHeader/print_vals.F b/src/FVCOM_source/PaxHeader/print_vals.F → src/PaxHeader/print_vals.F
diff --git a/src/FVCOM_source/PaxHeader/rho_pmean.F → src/PaxHeader/rho_pmean.F b/src/FVCOM_source/PaxHeader/rho_pmean.F → src/PaxHeader/rho_pmean.F
diff --git a/src/FVCOM_source/PaxHeader/sectinf.F → src/PaxHeader/sectinf.F b/src/FVCOM_source/PaxHeader/sectinf.F → src/PaxHeader/sectinf.F
diff --git a/src/FVCOM_source/PaxHeader/setup_domain.F → src/PaxHeader/setup_domain.F b/src/FVCOM_source/PaxHeader/setup_domain.F → src/PaxHeader/setup_domain.F
diff --git a/src/FVCOM_source/PaxHeader/shape_coef_gcn.F → src/PaxHeader/shape_coef_gcn.F b/src/FVCOM_source/PaxHeader/shape_coef_gcn.F → src/PaxHeader/shape_coef_gcn.F
diff --git a/src/FVCOM_source/PaxHeader/shape_coef_gcy.F → src/PaxHeader/shape_coef_gcy.F b/src/FVCOM_source/PaxHeader/shape_coef_gcy.F → src/PaxHeader/shape_coef_gcy.F
diff --git a/src/FVCOM_source/PaxHeader/sinter.F → src/PaxHeader/sinter.F b/src/FVCOM_source/PaxHeader/sinter.F → src/PaxHeader/sinter.F
diff --git a/src/FVCOM_source/PaxHeader/startup_type.F → src/PaxHeader/startup_type.F b/src/FVCOM_source/PaxHeader/startup_type.F → src/PaxHeader/startup_type.F
diff --git a/src/FVCOM_source/PaxHeader/swancom1.F → src/PaxHeader/swancom1.F b/src/FVCOM_source/PaxHeader/swancom1.F → src/PaxHeader/swancom1.F
diff --git a/src/FVCOM_source/PaxHeader/swancom2.F → src/PaxHeader/swancom2.F b/src/FVCOM_source/PaxHeader/swancom2.F → src/PaxHeader/swancom2.F
diff --git a/src/FVCOM_source/PaxHeader/swancom3.F → src/PaxHeader/swancom3.F b/src/FVCOM_source/PaxHeader/swancom3.F → src/PaxHeader/swancom3.F
diff --git a/src/FVCOM_source/PaxHeader/swancom4.F → src/PaxHeader/swancom4.F b/src/FVCOM_source/PaxHeader/swancom4.F → src/PaxHeader/swancom4.F
diff --git a/src/FVCOM_source/PaxHeader/swancom5.F → src/PaxHeader/swancom5.F b/src/FVCOM_source/PaxHeader/swancom5.F → src/PaxHeader/swancom5.F
diff --git a/src/FVCOM_source/PaxHeader/swanmain.F → src/PaxHeader/swanmain.F b/src/FVCOM_source/PaxHeader/swanmain.F → src/PaxHeader/swanmain.F
diff --git a/src/FVCOM_source/PaxHeader/swanpre1.F → src/PaxHeader/swanpre1.F b/src/FVCOM_source/PaxHeader/swanpre1.F → src/PaxHeader/swanpre1.F
diff --git a/src/FVCOM_source/PaxHeader/swanpre2.F → src/PaxHeader/swanpre2.F b/src/FVCOM_source/PaxHeader/swanpre2.F → src/PaxHeader/swanpre2.F
diff --git a/src/FVCOM_source/PaxHeader/swanser.F → src/PaxHeader/swanser.F b/src/FVCOM_source/PaxHeader/swanser.F → src/PaxHeader/swanser.F
diff --git a/src/FVCOM_source/PaxHeader/swmod1.F → src/PaxHeader/swmod1.F b/src/FVCOM_source/PaxHeader/swmod1.F → src/PaxHeader/swmod1.F
diff --git a/src/FVCOM_source/PaxHeader/swmod2.F → src/PaxHeader/swmod2.F b/src/FVCOM_source/PaxHeader/swmod2.F → src/PaxHeader/swmod2.F
diff --git a/src/FVCOM_source/PaxHeader/swmod3.F → src/PaxHeader/swmod3.F b/src/FVCOM_source/PaxHeader/swmod3.F → src/PaxHeader/swmod3.F
diff --git a/src/FVCOM_source/PaxHeader/testing → src/PaxHeader/testing b/src/FVCOM_source/PaxHeader/testing → src/PaxHeader/testing
diff --git a/src/FVCOM_source/PaxHeader/tge.F → src/PaxHeader/tge.F b/src/FVCOM_source/PaxHeader/tge.F → src/PaxHeader/tge.F
diff --git a/src/FVCOM_source/PaxHeader/utilities → src/PaxHeader/utilities b/src/FVCOM_source/PaxHeader/utilities → src/PaxHeader/utilities
diff --git a/src/FVCOM_source/PaxHeader/vdif_q.F → src/PaxHeader/vdif_q.F b/src/FVCOM_source/PaxHeader/vdif_q.F → src/PaxHeader/vdif_q.F
diff --git a/src/FVCOM_source/PaxHeader/vdif_ts.F → src/PaxHeader/vdif_ts.F b/src/FVCOM_source/PaxHeader/vdif_ts.F → src/PaxHeader/vdif_ts.F
diff --git a/src/FVCOM_source/PaxHeader/vdif_ts_gom.F → src/PaxHeader/vdif_ts_gom.F b/src/FVCOM_source/PaxHeader/vdif_ts_gom.F → src/PaxHeader/vdif_ts_gom.F
diff --git a/src/FVCOM_source/PaxHeader/vdif_uv.F → src/PaxHeader/vdif_uv.F b/src/FVCOM_source/PaxHeader/vdif_uv.F → src/PaxHeader/vdif_uv.F
diff --git a/src/FVCOM_source/PaxHeader/vertvl_edge.F → src/PaxHeader/vertvl_edge.F b/src/FVCOM_source/PaxHeader/vertvl_edge.F → src/PaxHeader/vertvl_edge.F
diff --git a/src/FVCOM_source/PaxHeader/viscofh.F → src/PaxHeader/viscofh.F b/src/FVCOM_source/PaxHeader/viscofh.F → src/PaxHeader/viscofh.F
diff --git a/src/FVCOM_source/PaxHeader/visitsim.F → src/PaxHeader/visitsim.F b/src/FVCOM_source/PaxHeader/visitsim.F → src/PaxHeader/visitsim.F
diff --git a/src/FVCOM_source/PaxHeader/w3part.F → src/PaxHeader/w3part.F b/src/FVCOM_source/PaxHeader/w3part.F → src/PaxHeader/w3part.F
diff --git a/src/FVCOM_source/PaxHeader/wreal.F → src/PaxHeader/wreal.F b/src/FVCOM_source/PaxHeader/wreal.F → src/PaxHeader/wreal.F
diff --git a/src/README.md b/src/README.md
diff --git a/src/FVCOM_source/RELEASE_NOTES → src/RELEASE_NOTES b/src/FVCOM_source/RELEASE_NOTES → src/RELEASE_NOTES
diff --git a/src/FVCOM_source/adcor.F → src/adcor.F b/src/FVCOM_source/adcor.F → src/adcor.F
diff --git a/src/FVCOM_source/adjust2d3d.F → src/adjust2d3d.F b/src/FVCOM_source/adjust2d3d.F → src/adjust2d3d.F
diff --git a/src/FVCOM_source/adjust_ts.F → src/adjust_ts.F b/src/FVCOM_source/adjust_ts.F → src/adjust_ts.F
diff --git a/src/FVCOM_source/adv_q.F → src/adv_q.F b/src/FVCOM_source/adv_q.F → src/adv_q.F
diff --git a/src/FVCOM_source/adv_s.F → src/adv_s.F b/src/FVCOM_source/adv_s.F → src/adv_s.F
diff --git a/src/FVCOM_source/adv_t.F → src/adv_t.F b/src/FVCOM_source/adv_t.F → src/adv_t.F
diff --git a/src/FVCOM_source/adv_uv_edge_gcn.F → src/adv_uv_edge_gcn.F b/src/FVCOM_source/adv_uv_edge_gcn.F → src/adv_uv_edge_gcn.F
diff --git a/src/FVCOM_source/adv_uv_edge_gcy.F → src/adv_uv_edge_gcy.F b/src/FVCOM_source/adv_uv_edge_gcy.F → src/adv_uv_edge_gcy.F
diff --git a/src/FVCOM_source/advave_edge_gcn.F → src/advave_edge_gcn.F b/src/FVCOM_source/advave_edge_gcn.F → src/advave_edge_gcn.F
diff --git a/src/FVCOM_source/advave_edge_gcy.F → src/advave_edge_gcy.F b/src/FVCOM_source/advave_edge_gcy.F → src/advave_edge_gcy.F
diff --git a/src/FVCOM_source/advection_edge_gcn.F → src/advection_edge_gcn.F b/src/FVCOM_source/advection_edge_gcn.F → src/advection_edge_gcn.F
diff --git a/src/FVCOM_source/advection_edge_gcy.F → src/advection_edge_gcy.F b/src/FVCOM_source/advection_edge_gcy.F → src/advection_edge_gcy.F
diff --git a/src/FVCOM_source/allocate_all.F → src/allocate_all.F b/src/FVCOM_source/allocate_all.F → src/allocate_all.F
diff --git a/src/FVCOM_source/baropg.F → src/baropg.F b/src/FVCOM_source/baropg.F → src/baropg.F
diff --git a/src/FVCOM_source/bcond_gcn.F → src/bcond_gcn.F b/src/FVCOM_source/bcond_gcn.F → src/bcond_gcn.F
diff --git a/src/FVCOM_source/bcond_gcy.F → src/bcond_gcy.F b/src/FVCOM_source/bcond_gcy.F → src/bcond_gcy.F
diff --git a/src/FVCOM_source/bcond_ts.F → src/bcond_ts.F b/src/FVCOM_source/bcond_ts.F → src/bcond_ts.F
diff --git a/src/FVCOM_source/bio_model.in → src/bio_model.in b/src/FVCOM_source/bio_model.in → src/bio_model.in
diff --git a/src/FVCOM_source/brough.F → src/brough.F b/src/FVCOM_source/brough.F → src/brough.F
diff --git a/src/FVCOM_source/calc_vort.F → src/calc_vort.F b/src/FVCOM_source/calc_vort.F → src/calc_vort.F
diff --git a/src/FVCOM_source/cell_area.F → src/cell_area.F b/src/FVCOM_source/cell_area.F → src/cell_area.F
diff --git a/src/FVCOM_source/cntrl_prmtrs.F → src/cntrl_prmtrs.F b/src/FVCOM_source/cntrl_prmtrs.F → src/cntrl_prmtrs.F
diff --git a/src/FVCOM_source/coare26z.F → src/coare26z.F b/src/FVCOM_source/coare26z.F → src/coare26z.F
diff --git a/src/FVCOM_source/coare40vn.F → src/coare40vn.F b/src/FVCOM_source/coare40vn.F → src/coare40vn.F
diff --git a/src/FVCOM_source/conv_over.F → src/conv_over.F b/src/FVCOM_source/conv_over.F → src/conv_over.F
diff --git a/src/FVCOM_source/coords_n_const.F → src/coords_n_const.F b/src/FVCOM_source/coords_n_const.F → src/coords_n_const.F
diff --git a/src/FVCOM_source/depth_check.F → src/depth_check.F b/src/FVCOM_source/depth_check.F → src/depth_check.F
diff --git a/src/FVCOM_source/depth_grad.F → src/depth_grad.F b/src/FVCOM_source/depth_grad.F → src/depth_grad.F
diff --git a/src/FVCOM_source/edge_len.F → src/edge_len.F b/src/FVCOM_source/edge_len.F → src/edge_len.F
diff --git a/src/FVCOM_source/enkf_ncdio.F → src/enkf_ncdio.F b/src/FVCOM_source/enkf_ncdio.F → src/enkf_ncdio.F
diff --git a/src/FVCOM_source/eqs_of_state.F → src/eqs_of_state.F b/src/FVCOM_source/eqs_of_state.F → src/eqs_of_state.F
diff --git a/src/FVCOM_source/extel_edge.F → src/extel_edge.F b/src/FVCOM_source/extel_edge.F → src/extel_edge.F
diff --git a/src/FVCOM_source/extelpf_edge.F → src/extelpf_edge.F b/src/FVCOM_source/extelpf_edge.F → src/extelpf_edge.F
diff --git a/src/FVCOM_source/external_step.F → src/external_step.F b/src/FVCOM_source/external_step.F → src/external_step.F
diff --git a/src/FVCOM_source/extuv_edge.F → src/extuv_edge.F b/src/FVCOM_source/extuv_edge.F → src/extuv_edge.F
diff --git a/src/FVCOM_source/fct_q2.F → src/fct_q2.F b/src/FVCOM_source/fct_q2.F → src/fct_q2.F
diff --git a/src/FVCOM_source/fct_q2l.F → src/fct_q2l.F b/src/FVCOM_source/fct_q2l.F → src/fct_q2l.F
diff --git a/src/FVCOM_source/fct_s.F → src/fct_s.F b/src/FVCOM_source/fct_s.F → src/fct_s.F
diff --git a/src/FVCOM_source/fct_t.F → src/fct_t.F b/src/FVCOM_source/fct_t.F → src/fct_t.F
diff --git a/src/FVCOM_source/func_pointer.c → src/func_pointer.c b/src/FVCOM_source/func_pointer.c → src/func_pointer.c
diff --git a/src/FVCOM_source/fvcom.F → src/fvcom.F b/src/FVCOM_source/fvcom.F → src/fvcom.F
diff --git a/src/FVCOM_source/genmap.F → src/genmap.F b/src/FVCOM_source/genmap.F → src/genmap.F
diff --git a/src/FVCOM_source/genmap_lsf.F → src/genmap_lsf.F b/src/FVCOM_source/genmap_lsf.F → src/genmap_lsf.F