Troubleshoot on Mac OS High Sierra with Anaconda
These instructions were kindly provided by Michael Antia
Follow general instructions: http://condor.readthedocs.io/en/latest/index.html
Issues and fixes:
Fix: Make sure that NFFT was successfully installed and then locate nfft3.h. If the file is located in a non-standard directory define it witgh:
python setup.py install --nfft-include-dir /where/nff3.h/is/located
While install Spsim (after installing Libspimage) The SPIMAGE_INCLUDE_DIR and SPIMAGE_LIBRARY setting parameters were blank under the configuration setting while using CCMAKE. This led to the following warnings being issued:
CMake Error: The following variables are used in this project, but they are set to NOTFOUND. Please set them or make sure they are set and tested correctly in the CMake files: SPIMAGE_INCLUDE_DIR used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src used as include directory in directory /Users/michaelantia/spsim/src SPIMAGE_LIBRARY linked by target "libspsim" in directory /Users/michaelantia/spsim/src linked by target "image_integrate" in directory /Users/michaelantia/spsim/src linked by target "box_deconvolute" in directory /Users/michaelantia/spsim/src linked by target "spsim" in directory /Users/michaelantia/spsim/src
Libspimage was reinstalled to /usr/local. spimage.h and libspimage.dylib were located and cmake variables were set accordingly:
SPIMAGE_INCLUDE_DIR = /usr/local/include
SPIMAGE_LIBRARY = /usr/local/bin64/libspimage.dylib