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phyx is a series of tools written in C++ for command line phylogenetic procedures. The idea is to work like standard unix/gnu/linux command line tools complete with manpages, stdin, stdout, and one task per program.

A list of the current programs is "here":https://github.com/FePhyFoFum/phyx/wiki/Program-list.

Installation instructions are "here":https://github.com/FePhyFoFum/phyx/wiki/Installation

Information for programmers

The goal for the code is to be approachable so that it is easy to add new functionality without too much effort. So class are kept simple and less abstract and methods are intended to be clear. Documentation is just getting started. There are a couple pages to get started. Add comments or edit if you like.

"Code style":https://github.com/FePhyFoFum/phyx/wiki/Code-style

"Program style":https://github.com/FePhyFoFum/phyx/wiki/Program-style