Trim Galore is a a Perl wrapper around two tools: Cutadapt and FastQC. To use, ensure that these two pieces of software are available and copy the
trim_galore script to a location available on the
# Check that cutadapt is installed cutadapt --version # Check that FastQC is installed fastqc -v # Install Trim Galore curl -fsSL https://github.com/FelixKrueger/TrimGalore/archive/0.6.6.tar.gz -o trim_galore.tar.gz tar xvzf trim_galore.tar.gz # Run Trim Galore ~/TrimGalore-0.6.6/trim_galore
For instructions on how to use Trim Galore, please see the User Guide.