Merge pull request #6 from Ferlab-Ste-Justine/pipeline_info-in-config

Add reports to outDir/pipeline_info
Ferlab-Ste-Justine · Jun 10, 2024 · e8c3831 · e8c3831
2 parents 9305216 + 3cb4303
commit e8c3831
Showing 1 changed file with 18 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -17,3 +17,21 @@ params {
                    [name: 'MQRankSum-12.5', expression: 'MQRankSum < -12.5'],
                    [name: 'ReadPosRankSum-8', expression: 'ReadPosRankSum < -8.0']]
 }
+
+def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
+timeline {
+    enabled = true
+    file    = "${params.outputDir}/pipeline_info/execution_timeline_${trace_timestamp}.html"
+}
+report {
+    enabled = true
+    file    = "${params.outputDir}/pipeline_info/execution_report_${trace_timestamp}.html"
+}
+trace {
+    enabled = true
+    file    = "${params.outputDir}/pipeline_info/execution_trace_${trace_timestamp}.txt"
+}
+dag {
+    enabled = true
+    file    = "${params.outputDir}/pipeline_info/pipeline_dag_${trace_timestamp}.html"
+}