This repository is a container of the material for the R-Ladies Rome talk of April 22, 2023.
It contains information about how to make a SIR model with R.
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Deterministic SIR model: first part of the talk by @fgazzelloni https://fgazzelloni.quarto.pub/deterministic-sir-model-with-r/
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Bayesian SIR model: this is the material for the second part of the talk taken by @jburos https://github.com/jburos/r-ladies-sir-model
Resources Deterministic & Bayesian modeling:
- https://desolve.r-forge.r-project.org/
- https://mc-stan.org/cmdstanr/
- https://cran.r-project.org/web/packages/tidybayes/vignettes/tidybayes.html
- https://cran.r-project.org/web/packages/rstan/vignettes/rstan.html
- https://mc-stan.org/users/documentation/case-studies/boarding_school_case_study.html
- https://www.generable.com/post/fitting-a-basic-sir-model-in-stan