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(Using 1.3 version on Snow Leopard. Previous versions worked fine.)
Editing the paths to a vhost folder in the pane correctly updates the DocumentRoot in the respective .conf file, but does not properly change the matching < directory > directive. This happened on multiple vhost confs. (I ended up editing them by hand to fix it.)
Only replace the paths in the user_defined_data when writing out. Closed by 536b769.