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Finn-Lab

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  1. MAG_Snakemake_wf MAG_Snakemake_wf Public

    Recovery of prokaryotic genomes from shotgun metagenomic sequencing data

    HTML 53 14

  2. MGS-gut MGS-gut Public

    Analysing Metagenomic Species (MGS)

    R 40 11

  3. SanntiS SanntiS Public

    Forked from Finn-Lab/emeraldBGC

    SMBGC Annotation using Neural Networks Trained on Interpro Signatures

    Python 18 1

  4. plastiC plastiC Public

    A Snakemake workflow for recovery of plastid genomes from metagenomic samples

    Python 9

  5. Tax-Benchmarking Tax-Benchmarking Public

    Benchmarking taxonomic analysis tools and databases.

    R 7 2

  6. oral_comparison oral_comparison Public

    Comparison of oral microbiome datasets

    R 4

Repositories

Showing 10 of 14 repositories
  • emeraldBGC Public

    SMBGC detection tool. This project has been deprecated and is no longer being maintained. All ongoing and future development has been moved to SanntiS

    Finn-Lab/emeraldBGC’s past year of commit activity
    Python 1 Apache-2.0 3 1 1 Updated Apr 29, 2024
  • SanntiS Public Forked from Finn-Lab/emeraldBGC

    SMBGC Annotation using Neural Networks Trained on Interpro Signatures

    Finn-Lab/SanntiS’s past year of commit activity
    Python 18 Apache-2.0 3 0 0 Updated Mar 27, 2024
  • trapiche Public

    Hybrid method for biome prediction in metagenomic datasets

    Finn-Lab/trapiche’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 18, 2024
  • plastiC Public

    A Snakemake workflow for recovery of plastid genomes from metagenomic samples

    Finn-Lab/plastiC’s past year of commit activity
    Python 9 GPL-3.0 0 0 0 Updated Sep 7, 2023
  • skin_microbiome Public
    Finn-Lab/skin_microbiome’s past year of commit activity
    R 0 0 0 0 Updated Oct 22, 2021
  • MAG_Snakemake_wf Public

    Recovery of prokaryotic genomes from shotgun metagenomic sequencing data

    Finn-Lab/MAG_Snakemake_wf’s past year of commit activity
    HTML 53 14 0 0 Updated Apr 18, 2021
  • MGS-gut Public

    Analysing Metagenomic Species (MGS)

    Finn-Lab/MGS-gut’s past year of commit activity
    R 40 11 0 0 Updated Nov 12, 2020
  • Tax-Benchmarking Public

    Benchmarking taxonomic analysis tools and databases.

    Finn-Lab/Tax-Benchmarking’s past year of commit activity
    R 7 2 0 0 Updated Nov 12, 2020
  • Metagen-FastQC Public

    Wrapper to clean metagenomic reads

    Finn-Lab/Metagen-FastQC’s past year of commit activity
    Shell 4 2 0 0 Updated Nov 12, 2020
  • mgnify-lr Public Forked from hoelzer/mgnify-lr

    Evaluation of long-read support for the MGnify pipeline

    Finn-Lab/mgnify-lr’s past year of commit activity
    Nextflow 0 GPL-3.0 5 0 0 Updated Sep 10, 2020
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