Use KernelAbstractions to accelerate MultilayerQG.streamfunctionfrompv!

[glwagner]

KernelAbstractions.jl can be used to accelerate the function

GeophysicalFlows.jl/src/multilayerqg.jl

Lines 299 to 302 in 47a2b51

	function streamfunctionfrompv!(ψh, qh, params, grid)
	for j=1:grid.nl, i=1:grid.nkr
	CUDA.@allowscalar @views ψh[i, j, :] .= params.invS[i, j] * qh[i, j, :]
	end

A simple example showing how to use KernelAbstractions is the "Naive Transpose":

https://juliagpu.gitlab.io/KernelAbstractions.jl/examples/naive_transpose/

[glwagner]

The first step is to write a kernel, which will look something like

@kernel invert_column!(ψh, qh, S⁻¹)
    i, j = @index(Global, NTuple)
    @inbounds ψh[i, j] .= S⁻¹[i, j] * qh[i, j]
end

The next step is to create a work layout over which the kernel is launched. If we restrict attention to models that always have more than 32 grid points, we can use something like

# Larger workgroups are generally more efficient. For more generality, we could put an if statement that incurs
# different behavior when either nkl or nl are less than 16
workgroup = 16, 16

# The size determines how many times the kernel is run
worksize = grid.nkr, grid.nl

# This (and its useage below) will ensure the kernel is not run _before_ the data in qh is available
barrier = Event(dev)

# Creates a loop over the specified worksize, using workgroup to organize the computation
loop_invert_column! = invert_column!(dev, workgroup, worksize)

# Launch the kernel
event = loop_invert_column!(ψh, qh, params.invS, dependencies=barrier)

# This will ensure that no other operations occur until the kernel has finished
wait(dev, event)

[glwagner]

One thing I am not totally sure about is whether KernelAbstractions will compile away the matrix multiplication in @inbounds ψh[i, j] .= S⁻¹[i, j] * qh[i, j]. I think that it will. If not, we may have to unroll our own loop.

[glwagner]

By the way, I think this optimization also requires the columns of ψh[i, j] to be stored as StaticArrays. It looks like ψh is a 3D array right now. Other parts of the code may also have to converted to kernels if this change is made, since broadcasting over the 3D array would no longer work.

[navidcy]

With this last suggestion would x, y FFTs work nicely?

[glwagner]

With this last suggestion would x, y FFTs work nicely?

Oof, good point.

Hmm, maybe we need to hand-write the matrix matrix multiply then. Not sure.

[navidcy]

yes it's been coming to haunt us either way...
(I remember a similar discussion some months ago...)

[glwagner]

Something like

@kernel invert_column!(ψh, qh, S⁻¹)
    i, j = @index(Global, NTuple)
    ψh_column = view(ψh, i, j, :)
    qh_column = view(qh, i, j, :)
    @inbounds ψh_column .= S⁻¹[i, j] * qh_column
end

might work.

[glwagner]

Otherwise a kernel along the lines of

using KernelAbstractions.Extras.LoopInfo: @unroll

@kernel invert_column!(ψh, qh, S⁻¹, nz)
    i, j = @index(Global, NTuple)

    @unroll for k = 1:nz

        @inbounds ψh[i, j, k] = 0

        @unroll for m = 1:nz
            @inbounds ψh[i, j, k] += S⁻¹[i, j][k, m] * qh[i, j, m]
        end

    end
end

might work, alternatively. Or maybe my indices are screwed up --- whichever is correct.

Nothing is too difficult, it's just a matter of trying it out.

[navidcy]

I should resurrect this..

[navidcy]

What about https://github.com/mcabbott/Tullio.jl to the rescue? (just a random thought)

[glwagner]

There's probably a lot of solutions! I think I gave two, but there might be more.