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v1.1.5 geo downloader fixes and documentation fixes #29

Merged
merged 31 commits into from Oct 8, 2019
Merged

v1.1.5 geo downloader fixes and documentation fixes #29

merged 31 commits into from Oct 8, 2019

Commits on Aug 14, 2019

  1. added batch_size parameter to run_pipeline

    @markt
    markt committed Aug 14, 2019
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  2. added CLI functionality

    @markt
    markt committed Aug 14, 2019
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Commits on Aug 19, 2019

  1. batch_size python/CLI and tests

    @markt
    markt committed Aug 19, 2019
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Commits on Sep 3, 2019

  1. removed test; changed default behavior: won't raise error if file-to-… 

    …be-downloaded already exists
    @marcmaxson
    marcmaxson committed Sep 3, 2019
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Commits on Sep 5, 2019

  1. merging batch_size into dev

    @marcmaxson
    marcmaxson committed Sep 5, 2019
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  2. Merge branch 'feature/batch_size' into dev

    @marcmaxson
    marcmaxson committed Sep 5, 2019
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  3. Update setup.py

    Marc Maxmeister committed Sep 5, 2019
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  4. Update test_batch_size.py

    Marc Maxmeister committed Sep 5, 2019
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  5. Rename test_batch_size.py to test_pipeline_batch_size.py

    Marc Maxmeister committed Sep 5, 2019
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  6. dropped redundant tests and sped up one

    Marc Maxmeister committed Sep 5, 2019
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  7. Feature/public data (#21) 

    * download command, as well as some batch_size adjustments

* fixed string issue

* renaming update and removed redundant tests

* bs4 required for Array ingester

* tests

* workaround to return objects with batch size changes

* workaround to return objects with batch size changes

* bug

* tests pass for batch_size
    Marc Maxmeister committed Sep 5, 2019
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  8. version 1.1 (#22) 

    * download command, as well as some batch_size adjustments

* fixed string issue

* renaming update and removed redundant tests

* bs4 required for Array ingester

* tests

* workaround to return objects with batch size changes

* workaround to return objects with batch size changes

* bug

* tests pass for batch_size

* progress bars
    Marc Maxmeister committed Sep 5, 2019
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  9. Merge branch 'master' into dev

    Marc Maxmeister committed Sep 5, 2019
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  10. documenting download

    Marc Maxmeister committed Sep 5, 2019
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Commits on Sep 11, 2019

  1. Update cli.py

    Marc Maxmeister committed Sep 11, 2019
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  2. restore sample_name filter

    Marc Maxmeister committed Sep 11, 2019
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Commits on Sep 16, 2019

  1. added rawMetaDataset class and moved get_sample_sheet_s3 to more logi… 

    …cal place here (#24)
    Marc Maxmeister committed Sep 16, 2019
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Commits on Sep 18, 2019

  1. updated docs for 1.1.1

    Marc Maxmeister committed Sep 18, 2019
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  2. Update README.md

    Marc Maxmeister committed Sep 18, 2019
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  3. Update setup.py

    Marc Maxmeister committed Sep 18, 2019
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  4. exposed create_sample_sheet and download no_clean options

    @marcmaxson
    marcmaxson committed Sep 18, 2019
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  5. Merge branch 'dev' of https://github.com/LifeEGX/methylprep into dev

    @marcmaxson
    marcmaxson committed Sep 18, 2019
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Commits on Sep 19, 2019

  1. manifest file download in lambda

    @marcmaxson
    marcmaxson committed Sep 19, 2019
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  2. manifest file download in lambda

    @marcmaxson
    marcmaxson committed Sep 19, 2019
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  3. manifest file download in lambda

    @marcmaxson
    marcmaxson committed Sep 19, 2019
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  4. v1.1.3 bump bug fix

    @marcmaxson
    marcmaxson committed Sep 19, 2019
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Commits on Sep 24, 2019

  1. handles blank sample_name and ensures names are unique.

    @marcmaxson
    marcmaxson committed Sep 24, 2019
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  2. Update setup.py

    Marc Maxmeister committed Sep 24, 2019
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  3. Merge branch 'master' into dev

    Marc Maxmeister committed Sep 24, 2019
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Commits on Oct 8, 2019

  1. geo downloader tweaks, fixed docs

    @marcmaxson
    marcmaxson committed Oct 8, 2019
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  2. Merge branch 'master' into dev

    Marc Maxmeister committed Oct 8, 2019
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