simplify

FredHutch · Apr 7, 2020 · 77c318a · 77c318a
1 parent 727324d
commit 77c318a
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/baseConfig/cromServer.sh b/baseConfig/cromServer.sh
@@ -2,6 +2,7 @@
 #SBATCH --partition=largenode
 #SBATCH --cpus-per-task=6
 #SBATCH --mem=43G
+#SBATCH -N 1
 
 ## This script needs two parameters;
 ## The first is the path to the cromwellParams.sh file that contains your customizatiosn
@@ -17,16 +18,15 @@ source ${1}
 # Load the Cromwell Module
 module load cromwell/49-Java-1.8
 
+
 # Run your server!
 java -Xms4g \
     -Dconfig.file=${CROMWELLCONFIG} \
     -DLOG_MODE=pretty \
     -DLOG_LEVEL=INFO \
     -Dbackend.providers.gizmo.config.root=${SCRATCHPATH} \
     -Dworkflow-options.workflow-log-dir=${WORKFLOWLOGDIR} \
-    -Dworkflow-options.final_workflow_log_dir=${WORKFLOWLOGDIR} \
     -Dworkflow-options.final_workflow_outputs_dir=${WORKFLOWOUTPUTSDIR} \
-    -Dworkflow-options.final_call_logs_dir=${WORKFLOWCALLOGSDIR} \
     -Ddatabase.db.url=jdbc:mysql://mydb:${CROMWELLDBPORT}/${CROMWELLDBNAME}?rewriteBatchedStatements=true \
     -Ddatabase.db.user=${CROMWELLDBUSERNAME} \
     -Ddatabase.db.password=${CROMWELLDBPASSWORD} \

diff --git a/baseConfig/cromwellParams.sh b/baseConfig/cromwellParams.sh
@@ -10,10 +10,6 @@ WORKFLOWLOGDIR=/fh/fast/pilastname_f/cromwell/workflow-logs
 ### Suggestion: /fh/fast/pilastname_f/cromwell/outputs
 WORKFLOWOUTPUTSDIR=/fh/fast/pilastname_f/cromwell/outputs
 
-## Where do you want individual task-level logs to be written after a workflow is successful?
-### Suggestion: /fh/fast/pilastname_f/cromwell/workflow-outputs
-WORKFLOWCALLLOGSDIR=/fh/fast/pilastname_f/cromwell/workflow-outputs
-
 ## Where is your configuration file?
 ### Suggestion: /fh/fast/pilastname_f/cromwell/fh-slurm-cromwell.config
 CROMWELLCONFIG=/fh/fast/pilastname_f/cromwell/fh-slurm-cromwell.config