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start recording extra info on pg IDs #172

start recording extra info on pg IDs

start recording extra info on pg IDs #172

Triggered via pull request July 3, 2024 18:32
@kweavkweav
synchronize #43
filter_ki3
Status Failure
Total duration 1m 51s
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R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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21 errors and 53 warnings
macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (release)
--- re-building ‘getting_started.Rmd’ using rmarkdown
macOS-latest (release)
processing vignette 'getting_started.Rmd' failed with diagnostics:
macOS-latest (release)
Vignette re-building failed.
macOS-latest (release)
Build process failed
macOS-latest (release)
Process completed with exit code 1.
ubuntu-20.04 (release)
--- re-building ‘getting_started.Rmd’ using rmarkdown
ubuntu-20.04 (release)
processing vignette 'getting_started.Rmd' failed with diagnostics:
ubuntu-20.04 (release)
Vignette re-building failed.
ubuntu-20.04 (release)
Build process failed
ubuntu-20.04 (release)
Process completed with exit code 1.
ubuntu-20.04 (devel)
--- re-building ‘getting_started.Rmd’ using rmarkdown
ubuntu-20.04 (devel)
processing vignette 'getting_started.Rmd' failed with diagnostics:
ubuntu-20.04 (devel)
Vignette re-building failed.
ubuntu-20.04 (devel)
Build process failed
ubuntu-20.04 (devel)
Process completed with exit code 1.
windows-latest (release)
--- re-building 'getting_started.Rmd' using rmarkdown
windows-latest (release)
processing vignette 'getting_started.Rmd' failed with diagnostics:
windows-latest (release)
Vignette re-building failed.
windows-latest (release)
Build process failed
windows-latest (release)
Process completed with exit code 1.
macOS-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:14: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:16: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:18: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/Rtmplg4XKy/Rbuild126a179fa812/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
macOS-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-20.04 (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (release)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:14: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:16: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:18: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpjrKT0o/Rbuild250022faa378/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
ubuntu-20.04 (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-20.04 (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:14: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:16: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:18: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp82WW8G/Rbuild2546564bd7b7/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:14: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:16: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:18: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpuStJfw/Rbuild64052ab67e1/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'