Fix bugs in `run_qc()`and test `run_qc()` #153

	# Candace Savonen 2024

	name: Style Code

	on:
	pull_request:
	branches: [ main, staging ]

	jobs:

	style-code:
	name: Style code
	runs-on: ubuntu-latest
	container:
	image: cansav09/gimap

	steps:
	- name: Checkout files
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: Login as jhudsl-robot
	run: \|
	git config --global --add safe.directory $GITHUB_WORKSPACE
	git config --global user.email "itcrtrainingnetwork@gmail.com"
	git config --global user.name "jhudsl-robot"

	- name: Run styler
	run: Rscript -e "styler::style_file(list.files(pattern = 'Rmd$', recursive = TRUE, full.names = TRUE));warnings()"

	- name: Commit styled files
	run: \|
	git config --system --add safe.directory "$GITHUB_WORKSPACE"
	git add \*.Rmd
	git commit -m 'Style Rmds' \|\| echo "No changes to commit"
	git push origin \|\| echo "No changes to commit"

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