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Log fold change

Log fold change #185

Triggered via pull request July 9, 2024 15:13
@cansavvycansavvy
synchronize #26
cansavvy/lfc
Status Success
Total duration 4m 41s
Artifacts

R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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9 errors and 49 warnings
windows-latest (release)
Running examples in 'gimap-Ex.R' failed
windows-latest (release)
could not find function "hello"
macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (release)
Running examples in ‘gimap-Ex.R’ failed
macOS-latest (release)
could not find function "hello"
ubuntu-20.04 (release)
Running examples in ‘gimap-Ex.R’ failed
ubuntu-20.04 (release)
could not find function "hello"
ubuntu-20.04 (devel)
Running examples in ‘gimap-Ex.R’ failed
ubuntu-20.04 (devel)
could not find function "hello"
windows-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:12: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:14: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:16: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:18: unexpected section header '\description'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:21: unexpected section header '\examples'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_crispr.Rd:41: unexpected END_OF_INPUT '
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_gi.Rd:14: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_gi.Rd:16: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_gi.Rd:18: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpcTwF9O/Rbuild10185ad92312/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:12: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:14: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:16: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:18: unexpected section header '\description'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:21: unexpected section header '\examples'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_crispr.Rd:41: unexpected END_OF_INPUT '
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_gi.Rd:14: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_gi.Rd:16: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_gi.Rd:18: unknown macro '\item'
macOS-latest (release)
/private/var/folders/xz/lz5thm6s3vb1vdkk77vmkgbr0000gn/T/RtmpMiLNcJ/Rbuildb7d4880e6ae/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
ubuntu-20.04 (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:12: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:14: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:16: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:18: unexpected section header '\description'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:21: unexpected section header '\examples'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_crispr.Rd:41: unexpected END_OF_INPUT '
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_gi.Rd:14: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_gi.Rd:16: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_gi.Rd:18: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpY3PFBk/Rbuild2576382fcef/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
ubuntu-20.04 (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (devel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:12: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:14: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:16: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:18: unexpected section header '\description'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:21: unexpected section header '\examples'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_crispr.Rd:41: unexpected END_OF_INPUT '
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_gi.Rd:14: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_gi.Rd:16: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_gi.Rd:18: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/Rtmp4eZUYx/Rbuild261778cc15ee/gimap/man/calc_gi.Rd:20: unexpected section header '\description'