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biology/py-pybigwig: Update to 0.3.22
No real changes from 0.3.21 Add patch to resolve conflict with roundup() macro in sys/param.h Reported by: pkg-fallout
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Jason W. Bacon
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Jason W. Bacon
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Dec 16, 2023
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,3 +1,3 @@ | ||
TIMESTAMP = 1680381155 | ||
SHA256 (pyBigWig-0.3.21.tar.gz) = 5bff713fe3f8840e0fbe48cf8c8fe9d92c8af8ba107da0b845076164445d076e | ||
SIZE (pyBigWig-0.3.21.tar.gz) = 73827 | ||
TIMESTAMP = 1681053575 | ||
SHA256 (pyBigWig-0.3.22.tar.gz) = 5d4426f754bd7b7f6dc21d6c3f93b58a96a65b6eb2e578ae03b31a71272d2243 | ||
SIZE (pyBigWig-0.3.22.tar.gz) = 73864 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,29 @@ | ||
--- libBigWig/bwValues.c.orig 2023-12-16 13:51:54 UTC | ||
+++ libBigWig/bwValues.c | ||
@@ -5,7 +5,7 @@ | ||
#include <zlib.h> | ||
#include <errno.h> | ||
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-static uint32_t roundup(uint32_t v) { | ||
+static uint32_t bigwig_roundup(uint32_t v) { | ||
v--; | ||
v |= v >> 1; | ||
v |= v >> 2; | ||
@@ -346,7 +346,7 @@ static bwOverlappingIntervals_t *pushIntervals(bwOverl | ||
//Returns NULL on error, in which case o has been free()d | ||
static bwOverlappingIntervals_t *pushIntervals(bwOverlappingIntervals_t *o, uint32_t start, uint32_t end, float value) { | ||
if(o->l+1 >= o->m) { | ||
- o->m = roundup(o->l+1); | ||
+ o->m = bigwig_roundup(o->l+1); | ||
o->start = realloc(o->start, o->m * sizeof(uint32_t)); | ||
if(!o->start) goto error; | ||
o->end = realloc(o->end, o->m * sizeof(uint32_t)); | ||
@@ -366,7 +366,7 @@ static bbOverlappingEntries_t *pushBBIntervals(bbOverl | ||
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static bbOverlappingEntries_t *pushBBIntervals(bbOverlappingEntries_t *o, uint32_t start, uint32_t end, char *str, int withString) { | ||
if(o->l+1 >= o->m) { | ||
- o->m = roundup(o->l+1); | ||
+ o->m = bigwig_roundup(o->l+1); | ||
o->start = realloc(o->start, o->m * sizeof(uint32_t)); | ||
if(!o->start) goto error; | ||
o->end = realloc(o->end, o->m * sizeof(uint32_t)); |