biology/py-cutadapt: Update to 4.6

Numerous bug fixes and enhancements since 3.3
Changes: https://github.com/marcelm/cutadapt/tags

PR:             276814
Reported by:    wen

biology/py-cutadapt/Makefile

@@ -1,6 +1,5 @@
 PORTNAME=	cutadapt
-DISTVERSION=	3.3
-PORTREVISION=	1
+DISTVERSION=	4.6
 CATEGORIES=	biology python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -13,8 +12,8 @@ LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
-RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xopen==1.1:archivers/py-xopen@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}dnaio==0.5.1:biology/py-dnaio@${PY_FLAVOR}
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xopen>=1.6.0:archivers/py-xopen@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}dnaio>=1.2.0:biology/py-dnaio@${PY_FLAVOR}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-mock>0:devel/py-pytest-mock@${PY_FLAVOR}

biology/py-cutadapt/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1615045047
-SHA256 (cutadapt-3.3.tar.gz) = cf502bd0df120d584524ea0e834b45135233c38089e900bd41c3d5cd41ee6eea
-SIZE (cutadapt-3.3.tar.gz) = 294579
+TIMESTAMP = 1707060779
+SHA256 (cutadapt-4.6.tar.gz) = 924116f34569248035b16f58e73458ed4c0004e44823b80b07f4ab419272f591
+SIZE (cutadapt-4.6.tar.gz) = 250254