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biology/ad2vcf: Update to 0.1.3
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Updates for new biolibc API

Changes:        https://github.com/auerlab/ad2vcf/releases
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Jason W. Bacon authored and Jason W. Bacon committed Jun 11, 2021
1 parent 495634f commit 874cf7c
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6 changes: 4 additions & 2 deletions biology/ad2vcf/Makefile
@@ -1,5 +1,7 @@
# Created by: Jason Bacon <jwb@FreeBSD.org>

PORTNAME= ad2vcf
DISTVERSION= 0.1.2
DISTVERSION= 0.1.3
CATEGORIES= biology

MAINTAINER= jwb@FreeBSD.org
Expand All @@ -8,7 +10,7 @@ COMMENT= Add allelic depth info from a SAM stream to a VCF file
LICENSE= BSD2CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE

BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc
LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend

USE_GITHUB= yes
GH_ACCOUNT= auerlab
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6 changes: 3 additions & 3 deletions biology/ad2vcf/distinfo
@@ -1,3 +1,3 @@
TIMESTAMP = 1616510305
SHA256 (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = e85e221c69748082799f5b048412136d28a0395290b16728500fe30190eaea84
SIZE (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = 15204
TIMESTAMP = 1623420872
SHA256 (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 062e355c0de2d6351c099eb1004a19473140838476358cb66670de5f557043ea
SIZE (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 14484
6 changes: 2 additions & 4 deletions biology/ad2vcf/pkg-descr
@@ -1,6 +1,4 @@
ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file. SAM input is read via stdin and the VCF
input file is taken as a command-line argument. This allows expensive BAM/CRAM
decoding to be performed in parallel by a separate samtools process.
ad2vcf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.

WWW: https://github.com/auerlab/ad2vcf

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