biology/kallisto: Update to 0.50.1,1

Update kallisto index version to 13 A few other new features Changes: https://github.com/pachterlab/kallisto/releases Reported by: portscout
freebsd · Nov 4, 2023 · 8a2deae · 8a2deae
1 parent 5868083
commit 8a2deae
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Showing 3 changed files with 14 additions and 5 deletions.
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=		kallisto
 DISTVERSIONPREFIX=	v
-DISTVERSION=		0.50.0
-PORTREVISION=		2
+DISTVERSION=		0.50.1
 PORTEPOCH=		1
 CATEGORIES=		biology
 

diff --git a/biology/kallisto/distinfo b/biology/kallisto/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1688395958
-SHA256 (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = f9cc0058d08206cb6dde4a4dcaf8a778df5a939a6e021508eea9b00b0d6d5368
-SIZE (pachterlab-kallisto-v0.50.0_GH0.tar.gz) = 5939018
+TIMESTAMP = 1698923323
+SHA256 (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34
+SIZE (pachterlab-kallisto-v0.50.1_GH0.tar.gz) = 5947303
diff --git a/biology/kallisto/files/patch-src_main.cpp b/biology/kallisto/files/patch-src_main.cpp
@@ -0,0 +1,10 @@
+--- src/main.cpp.orig	2023-11-02 11:38:09 UTC
++++ src/main.cpp
+@@ -11,6 +11,7 @@
+ #include <limits>
+
+ #include <cstdio>
++#include <unistd.h>	// rmdir()
+
+ #include "common.h"
+ #include "ProcessReads.h"