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biology/star: Update to 2.7.11a
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A few bug fixes and new features
Add USE_GCC as a temporary hack for input read issue
This was also an issue in 2.7.10b

Changes: https://github.com/alexdobin/STAR/releases
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Jason W. Bacon authored and Jason W. Bacon committed Aug 17, 2023
1 parent 688b2ac commit a382bce
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Showing 4 changed files with 7 additions and 27 deletions.
5 changes: 4 additions & 1 deletion biology/star/Makefile
@@ -1,5 +1,5 @@
PORTNAME= STAR
DISTVERSION= 2.7.10b
DISTVERSION= 2.7.11a
CATEGORIES= biology
PKGNAMEPREFIX= rna-

Expand All @@ -16,9 +16,12 @@ NOT_FOR_ARCHS_REASON= Requires 64-bit processor
BROKEN= requires OpenMP support that is missing on this architecture
.endif

BUILD_DEPENDS= xxd:sysutils/xxd
LIB_DEPENDS= libhts.so:biology/htslib

USES= compiler:c++11-lang gmake localbase:ldflags
# FIXME: When built with clang, number of input reads = 0
USE_GCC= yes
USE_GITHUB= yes
GH_ACCOUNT= alexdobin

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6 changes: 3 additions & 3 deletions biology/star/distinfo
@@ -1,3 +1,3 @@
TIMESTAMP = 1689939622
SHA256 (alexdobin-STAR-2.7.10b_GH0.tar.gz) = 0d1b71de6c5be1c5d90b32130d2abcd5785a4fc7c1e9bf19cc391947f2dc46e5
SIZE (alexdobin-STAR-2.7.10b_GH0.tar.gz) = 12443703
TIMESTAMP = 1692285897
SHA256 (alexdobin-STAR-2.7.11a_GH0.tar.gz) = 542457b1a4fee73f27a581b1776e9f73ad2b4d7e790388b6dc71147bd039f99a
SIZE (alexdobin-STAR-2.7.11a_GH0.tar.gz) = 12463429
10 changes: 0 additions & 10 deletions biology/star/files/patch-SpliceGraph.cpp

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13 changes: 0 additions & 13 deletions biology/star/files/patch-opal_opal.cpp

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